Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GFB47_RS08365 Genome accession   NZ_CP045699
Coordinates   1827758..1828276 (-) Length   172 a.a.
NCBI ID   WP_153447577.1    Uniprot ID   -
Organism   Vibrio algicola strain SM1977     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822758..1833276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB47_RS08345 (GFB47_08330) rpsP 1823184..1823432 (-) 249 WP_153447573.1 30S ribosomal protein S16 -
  GFB47_RS08350 (GFB47_08335) ffh 1823680..1825059 (-) 1380 WP_153447574.1 signal recognition particle protein -
  GFB47_RS08355 (GFB47_08340) - 1825356..1826150 (+) 795 WP_178306467.1 inner membrane protein YpjD -
  GFB47_RS08360 (GFB47_08345) - 1826279..1827559 (+) 1281 WP_153447576.1 HlyC/CorC family transporter -
  GFB47_RS08365 (GFB47_08350) luxS 1827758..1828276 (-) 519 WP_153447577.1 S-ribosylhomocysteine lyase Regulator
  GFB47_RS08370 (GFB47_08355) - 1828309..1828896 (-) 588 WP_153447578.1 hypothetical protein -
  GFB47_RS08375 (GFB47_08360) gshA 1829019..1830629 (-) 1611 WP_178306468.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19130.86 Da        Isoelectric Point: 4.3912

>NTDB_id=396080 GFB47_RS08365 WP_153447577.1 1827758..1828276(-) (luxS) [Vibrio algicola strain SM1977]
MPLLDSFTVDHTRMQAPAVRVAKTMTTPKGDTITVFDLRFCIPNKDILSEKGIHTLEHLYAGFMRNQLNGSEVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLNVADQNKIPELNEYQCGTYSMHSLEEAQQIAKDIIAAGIQVNKNDELA
LPDSMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=396080 GFB47_RS08365 WP_153447577.1 1827758..1828276(-) (luxS) [Vibrio algicola strain SM1977]
ATGCCTTTACTTGATAGTTTTACCGTTGACCACACTCGTATGCAAGCGCCTGCGGTACGTGTAGCCAAGACAATGACCAC
GCCAAAGGGCGATACGATTACCGTCTTTGATTTACGTTTTTGTATTCCTAATAAAGATATTTTATCGGAAAAAGGCATCC
ATACGTTAGAGCATTTGTATGCTGGCTTTATGCGTAATCAACTAAATGGTTCTGAGGTGGAGATCATCGATATTTCCCCT
ATGGGTTGTCGTACTGGTTTCTACATGAGCTTAATTGGCACGCCGAGTGAGCAACAAGTGGCTGACGCTTGGTTAGCAGC
AATGCAAGATGTACTCAATGTGGCCGATCAAAACAAGATCCCTGAATTGAATGAATACCAGTGTGGTACTTATTCAATGC
ATTCTTTAGAAGAAGCGCAACAGATCGCCAAAGATATTATTGCGGCGGGTATCCAAGTCAATAAAAATGATGAATTGGCG
TTACCTGACTCTATGCTGCAAGAGCTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment