Detailed information NTG0396058

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GFB47_RS00985
• Genome accession: NZ_CP045699
• Coordinates: 214457..215464 (-)
• Length: 335 a.a.
• NCBI ID: WP_153445835.1
• Uniprot ID: A0A5Q0TDP6
• Organism: Vibrio algicola strain SM1977
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 209457..220464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFB47_RS00955 (GFB47_00960)	zapB	209487..209729 (+)	243	WP_153445825.1	cell division protein ZapB	-
GFB47_RS00960 (GFB47_00965)	rraA	209846..210367 (-)	522	WP_153445826.1	ribonuclease E activity regulator RraA	-
GFB47_RS00965 (GFB47_00970)	-	210561..211469 (-)	909	WP_153445828.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GFB47_RS00970 (GFB47_00975)	hslU	211599..212936 (-)	1338	WP_153445830.1	HslU--HslV peptidase ATPase subunit	-
GFB47_RS00975 (GFB47_00980)	hslV	213002..213520 (-)	519	WP_153445832.1	ATP-dependent protease subunit HslV	-
GFB47_RS00980 (GFB47_00985)	-	213725..214291 (-)	567	WP_153445833.1	SPOR domain-containing protein	-
GFB47_RS00985 (GFB47_00990)	cytR	214457..215464 (-)	1008	WP_153445835.1	DNA-binding transcriptional regulator CytR	Regulator
GFB47_RS00990 (GFB47_00995)	priA	215789..217990 (-)	2202	WP_153445837.1	primosomal protein N'	-
GFB47_RS00995 (GFB47_01000)	rpmE	218474..218689 (+)	216	WP_153445839.1	50S ribosomal protein L31	-
GFB47_RS01000 (GFB47_01005)	-	218850..220106 (+)	1257	WP_153445841.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37113.59 Da
• Isoelectric Point: 6.4963

>NTDB_id=396058 GFB47_RS00985 WP_153445835.1 214457..215464(-) (cytR) [Vibrio algicola strain SM1977]
MATMKEVARLAGVSTATVSRALMSPEKVSNSTRRRVEDAVMSSGYSPNSLVRNLRRNESKTIIVIVPDLCDPYFSEIIRG
IEDTAAEHDYLILLGDSSQQLNRETTFMNLVFTKQADGMVLLGSDTPFDVSKPEQKNLPPLVMGCEYAPELELPTVHIDN
LTAAFDIVNYLTQMGHKRVAEMSGPESAALCQFRHQGYQQALRRAGLEMNPSHRVYGDFSFESGALAVKRLLTQPEPPTA
IFCHNDAMAIGAMQQAKKMGYRIPQDLSVVGFDDIQFSQYCEPPLTTIAQPRYEIGKQSMLMLLETLKGNEVRAGSRLLE
ANLVIRNSAGPPKIK

Nucleotide

• Length: 1008 bp

>NTDB_id=396058 GFB47_RS00985 WP_153445835.1 214457..215464(-) (cytR) [Vibrio algicola strain SM1977]
ATGGCGACAATGAAGGAGGTTGCCCGACTTGCAGGCGTATCCACTGCCACCGTTTCAAGAGCATTAATGAGCCCAGAAAA
AGTATCTAACTCAACTCGAAGACGAGTAGAAGATGCGGTGATGTCATCGGGATATTCGCCTAACTCATTGGTAAGAAACT
TACGACGCAACGAATCGAAAACCATTATCGTTATCGTGCCGGATCTCTGTGATCCTTATTTCTCAGAAATCATTCGAGGG
ATTGAAGATACCGCCGCTGAACATGATTATTTAATTTTACTGGGTGATAGCAGTCAGCAACTTAACCGTGAAACCACGTT
TATGAATTTGGTGTTTACCAAACAAGCTGATGGCATGGTATTACTCGGTAGTGACACCCCTTTTGATGTCAGCAAGCCGG
AACAAAAAAATCTTCCACCTTTGGTAATGGGTTGTGAATACGCGCCAGAGCTAGAATTACCAACCGTGCATATTGATAAT
TTGACCGCCGCGTTTGATATCGTGAATTATCTGACTCAAATGGGACATAAACGCGTGGCCGAAATGTCAGGTCCAGAGAG
TGCAGCTTTATGTCAGTTCCGCCACCAAGGCTATCAACAAGCTCTGCGCCGAGCTGGGTTAGAAATGAACCCTAGTCATA
GAGTCTACGGTGATTTCAGTTTTGAATCCGGTGCTTTAGCGGTTAAGAGATTATTAACTCAGCCTGAACCTCCAACCGCT
ATCTTTTGTCATAATGATGCAATGGCGATTGGCGCAATGCAGCAAGCGAAGAAAATGGGCTATCGGATACCACAAGATCT
TTCGGTAGTCGGTTTTGATGATATTCAATTTTCACAATACTGCGAACCGCCATTAACCACTATTGCTCAGCCTCGTTATG
AGATTGGCAAACAATCAATGTTGATGTTATTAGAAACACTAAAAGGCAATGAAGTTCGAGCCGGTTCGCGCTTACTCGAA
GCCAACTTAGTCATCCGCAACAGCGCTGGGCCACCAAAAATTAAATAA

Domains

Predicted by InterproScan.

• Periplasmic binding proteins and sugar binding domain of LacI family (Peripla_BP_1) (60-311)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: A0A5Q0TDP6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	77.015	100	0.77
cytR	Vibrio parahaemolyticus RIMD 2210633	75.375	99.403	0.749