Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GF423_RS00880 Genome accession   NZ_CP045696
Coordinates   208939..210318 (-) Length   459 a.a.
NCBI ID   WP_154326571.1    Uniprot ID   A0A6L5XD75
Organism   Sodaliphilus pleomorphus strain Oil-RF-744-WCA-WT-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 203939..215318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GF423_RS00855 - 205216..205839 (+) 624 WP_154326566.1 flavodoxin family protein -
  GF423_RS00860 - 206062..206700 (+) 639 WP_154326567.1 DUF5715 family protein -
  GF423_RS00865 tatC 206758..207576 (-) 819 WP_154326568.1 twin-arginine translocase subunit TatC -
  GF423_RS00870 - 207579..207818 (-) 240 WP_154326569.1 Sec-independent protein translocase subunit TatA/TatB -
  GF423_RS00875 - 208022..208576 (+) 555 WP_154326570.1 NADPH-dependent FMN reductase -
  GF423_RS00880 radA 208939..210318 (-) 1380 WP_154326571.1 DNA repair protein RadA Machinery gene
  GF423_RS00885 - 210343..211107 (-) 765 WP_154326572.1 RNA methyltransferase -
  GF423_RS00890 - 211135..212238 (-) 1104 WP_154326573.1 M50 family metallopeptidase -
  GF423_RS00895 recQ 212386..214563 (-) 2178 WP_154326574.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49895.77 Da        Isoelectric Point: 7.2569

>NTDB_id=396045 GF423_RS00880 WP_154326571.1 208939..210318(-) (radA) [Sodaliphilus pleomorphus strain Oil-RF-744-WCA-WT-10]
MAKVKTMYFCKNCGAESPKWIGRCPACGEWNTYVEEPVAPKGKHGALLGDAGSGQTPAVPIKISEIKTEEMPRIKLPSAE
LDRVLGGGLVPGSIILIGGEPGIGKSTLVLQNVLRIRSRKVLYISGEESPQQLRMRADRIAGGKMDCECYLLCETSLDNI
FASIKANKPDLIIVDSIQTIASDQLESAAGSVSQVRECAATFLRYAKETNTPVILIGHINKEGSIAGPKVLEHIVDAVLQ
FEGDRHYMYRILRSIKNRFGNTSEIGIYEMKEDGLREVTNPSEMLLSLHGEALSGTAIGVTIDGARPFLIETQALVSTAA
YGTAQRSVTGFDQRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPALDLAVICAILSSNVDMPINKGICMSGEVGL
SGEIRQITRIDQRIGEAEKLGFESIIIPANNTRGLHSSDFKIKLIEVSKVEEAFRYLFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=396045 GF423_RS00880 WP_154326571.1 208939..210318(-) (radA) [Sodaliphilus pleomorphus strain Oil-RF-744-WCA-WT-10]
ATGGCTAAAGTGAAAACAATGTATTTTTGCAAGAATTGCGGCGCCGAGTCGCCCAAATGGATTGGGCGCTGCCCCGCATG
TGGGGAATGGAACACCTATGTGGAAGAGCCTGTGGCGCCCAAGGGGAAGCATGGTGCTTTGCTCGGCGACGCGGGCAGCG
GCCAGACTCCTGCGGTGCCAATCAAGATAAGTGAAATCAAGACCGAGGAAATGCCTCGCATCAAGTTGCCCAGTGCCGAG
CTCGACCGGGTGCTCGGCGGCGGCCTTGTCCCAGGCTCTATCATCTTGATTGGCGGTGAGCCTGGCATCGGCAAGTCGAC
GCTGGTGTTGCAAAACGTGCTTCGCATTCGCTCTCGCAAGGTGCTCTATATCTCGGGAGAGGAGAGCCCGCAGCAGTTGC
GCATGAGGGCCGACCGCATCGCGGGCGGGAAAATGGATTGTGAGTGCTACCTGCTGTGCGAAACCTCGCTCGACAACATC
TTTGCCAGCATCAAGGCCAACAAGCCCGATTTGATTATAGTTGACTCAATCCAGACGATTGCCAGCGACCAGCTCGAGTC
GGCGGCTGGCAGTGTGAGCCAGGTGAGGGAATGTGCTGCCACATTCTTGCGCTATGCCAAGGAGACCAACACCCCCGTGA
TATTGATAGGGCACATCAACAAAGAGGGCAGCATTGCTGGCCCTAAGGTGCTGGAGCACATCGTCGATGCTGTATTGCAA
TTTGAGGGCGACCGGCATTACATGTATCGCATCTTGCGCAGCATCAAGAATCGCTTTGGCAACACCAGCGAAATCGGAAT
ATATGAAATGAAAGAAGACGGGCTGCGCGAGGTCACCAATCCCAGCGAAATGCTGCTCTCGTTGCACGGCGAGGCCCTGT
CGGGCACGGCGATTGGTGTCACTATCGACGGCGCCCGCCCCTTCTTGATCGAGACTCAGGCGCTGGTGAGTACTGCTGCC
TACGGGACTGCTCAGCGCTCGGTCACAGGCTTTGACCAGCGCAGGATGAACATGCTGCTTGCCGTGCTGGAAAAGCGCGT
GGGCTTCAAGCTCGCGCAGAAGGATGTTTTCTTGAATATTGCTGGCGGTCTCAAGGTCAACGACCCTGCACTCGACCTGG
CCGTGATATGTGCAATACTTTCGAGCAACGTCGACATGCCCATCAACAAGGGAATATGCATGAGTGGCGAGGTGGGCCTC
TCGGGTGAAATCAGGCAGATCACTCGCATCGACCAGCGCATAGGCGAAGCCGAGAAACTGGGTTTTGAGAGTATCATAAT
CCCGGCAAACAATACGCGTGGCCTTCACTCAAGCGATTTCAAAATCAAGCTTATAGAAGTATCCAAGGTGGAGGAGGCCT
TCAGATACTTGTTTGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-223)

Subunit ChlI of Mg-chelatase (ChlI)

(321-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5XD75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.244

100

0.497
  radA Streptococcus mitis SK321

46.97

100

0.473
  radA Streptococcus pneumoniae Rx1

46.97

100

0.473
  radA Streptococcus pneumoniae D39

46.97

100

0.473
  radA Streptococcus pneumoniae R6

46.97

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.97

100

0.473
  radA Streptococcus mitis NCTC 12261

46.855

100

0.471

Multiple sequence alignment