Detailed information NTG0396034

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GF422_RS05750
• Genome accession: NZ_CP045695
• Coordinates: 1149530..1150885 (+)
• Length: 451 a.a.
• NCBI ID: WP_009248674.1
• Uniprot ID: A0A844FCK1
• Organism: [Clostridium] scindens strain BL389WT3D
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1144530..1155885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GF422_RS05730	ald	1144914..1146029 (+)	1116	WP_004605684.1	alanine dehydrogenase	-
GF422_RS05735	-	1146158..1146541 (+)	384	WP_009248676.1	GntR family transcriptional regulator	-
GF422_RS05740	-	1146538..1148976 (+)	2439	WP_154322373.1	ATP-dependent Clp protease ATP-binding subunit	-
GF422_RS05745	-	1149032..1149445 (+)	414	WP_004605687.1	hypothetical protein	-
GF422_RS05750	radA	1149530..1150885 (+)	1356	WP_009248674.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49127.95 Da
• Isoelectric Point: 6.2685

>NTDB_id=396034 GF422_RS05750 WP_009248674.1 1149530..1150885(+) (radA) [[Clostridium] scindens strain BL389WT3D]
MAKAKKSVFFCQNCGHEESKWLGQCPACKEWNTFVEEKVTSVKAGTVRDKKEAQIVALSSVETDEDERMMTEMAELDRVL
GGGIVPGSLVLVGGDPGIGKSTLLLQVCQRLAAMNKKILYISGEESLKQIKLRANRMGDFSHTLFLLCETNLDMIRNVIE
QQTPDMVVIDSIQTMYNEEVGSAPGSVSQVRESTNILMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDR
HASYRILRAVKNRFGSTNEIGVFEMQKRGLVEVENPSEFMLSGRPEHASGSVVACAMEGTRPMLMEIQALVCKSSFGMPR
RTAAGLDYNRVNLLMAVLEKRAGLPLSSYDAYVNIAGGIRMNEPAADLGIVMAIASSYKNKPVSEDAIVFGEVGLSGEVR
AVTMPEQRVAEAKKLGFKTCILPEVSVKGLGQVEGIEVIGVRSVNQAMNLL

Nucleotide

• Length: 1356 bp

>NTDB_id=396034 GF422_RS05750 WP_009248674.1 1149530..1150885(+) (radA) [[Clostridium] scindens strain BL389WT3D]
ATGGCAAAGGCAAAAAAAAGCGTATTCTTCTGCCAGAATTGCGGGCATGAAGAAAGCAAGTGGCTGGGACAGTGCCCAGC
GTGCAAAGAATGGAATACTTTTGTTGAAGAGAAGGTGACATCTGTAAAGGCTGGAACCGTGCGGGATAAGAAGGAAGCTC
AGATCGTAGCTTTGTCGAGCGTGGAGACGGATGAAGATGAACGCATGATGACGGAAATGGCAGAACTTGACCGGGTGCTT
GGAGGAGGAATCGTACCGGGCTCTCTGGTGCTGGTCGGAGGCGATCCTGGAATCGGGAAGTCTACGCTTCTTCTGCAGGT
CTGCCAGAGGCTGGCTGCTATGAATAAGAAGATATTATATATATCGGGAGAGGAATCTTTAAAGCAGATCAAGCTTAGGG
CAAACCGGATGGGGGATTTCTCCCATACCCTTTTTCTTCTGTGCGAGACGAATCTGGATATGATACGCAACGTAATCGAG
CAGCAGACGCCGGACATGGTGGTGATCGATTCGATTCAGACTATGTATAACGAAGAGGTGGGGTCAGCGCCAGGAAGCGT
GTCGCAGGTCAGAGAGTCTACGAATATCTTGATGCAGCTGGCTAAAGGACTAGGCATATCCATCTTTATCGTAGGACATG
TAACTAAAGAGGGCACGGTTGCGGGCCCCAGGGTATTGGAACATATGGTGGATACAGTGCTCTACTTTGAGGGAGACCGG
CATGCGTCCTACCGTATTCTCAGGGCGGTTAAGAACCGCTTTGGCTCGACCAATGAAATAGGAGTCTTTGAAATGCAGAA
AAGAGGCCTCGTGGAAGTAGAGAACCCTTCGGAATTCATGCTGAGTGGCAGGCCGGAACATGCATCCGGCTCCGTAGTGG
CATGTGCAATGGAAGGAACACGTCCGATGCTGATGGAGATTCAGGCATTGGTTTGCAAAAGCAGCTTCGGCATGCCCAGA
AGGACGGCGGCAGGCTTAGACTATAACCGCGTCAACCTGCTGATGGCAGTATTGGAAAAAAGGGCAGGATTGCCGCTGTC
CAGTTATGATGCCTACGTAAATATTGCCGGTGGCATCCGGATGAATGAGCCGGCAGCGGATCTGGGAATTGTGATGGCTA
TAGCGTCCAGTTATAAGAATAAGCCGGTGTCAGAAGATGCTATTGTTTTTGGAGAAGTAGGACTGAGCGGGGAAGTAAGG
GCTGTTACCATGCCGGAGCAGAGGGTCGCGGAGGCTAAGAAACTAGGATTTAAGACCTGTATTCTCCCGGAAGTATCGGT
GAAAGGGCTTGGGCAGGTTGAAGGAATCGAGGTTATAGGAGTCAGATCTGTAAACCAGGCGATGAATCTTTTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (64-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• Subunit ChlI of Mg-chelatase (ChlI) (344-424)

3D structure

• AlphaFold DB: A0A844FCK1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	56.954	100	0.572
radA	Streptococcus mitis NCTC 12261	55.333	99.778	0.552
radA	Streptococcus pneumoniae Rx1	55.333	99.778	0.552
radA	Streptococcus pneumoniae D39	55.333	99.778	0.552
radA	Streptococcus pneumoniae R6	55.333	99.778	0.552
radA	Streptococcus pneumoniae TIGR4	55.333	99.778	0.552
radA	Streptococcus mitis SK321	55.333	99.778	0.552