Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GHA50_RS17980 Genome accession   NZ_CP045694
Coordinates   3400555..3401151 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain TK421     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3395555..3406151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHA50_RS17965 (GHA50_17965) helD 3395763..3397817 (-) 2055 WP_009308304.1 DNA helicase IV -
  GHA50_RS17970 (GHA50_17970) - 3397942..3398388 (+) 447 WP_002898425.1 YccF domain-containing protein -
  GHA50_RS17975 (GHA50_17975) yccS 3398406..3400541 (+) 2136 WP_002898422.1 YccS family putative transporter -
  GHA50_RS17980 (GHA50_17980) sxy/tfoX 3400555..3401151 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  GHA50_RS17985 (GHA50_17985) sulA 3401500..3402009 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  GHA50_RS17990 (GHA50_17990) ompA 3402362..3403438 (+) 1077 WP_032432880.1 porin OmpA -
  GHA50_RS17995 (GHA50_17995) matP 3403570..3404022 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  GHA50_RS18000 (GHA50_18000) - 3404208..3405965 (+) 1758 WP_153459362.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=396021 GHA50_RS17980 WP_004179217.1 3400555..3401151(-) (sxy/tfoX) [Klebsiella pneumoniae strain TK421]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=396021 GHA50_RS17980 WP_004179217.1 3400555..3401151(-) (sxy/tfoX) [Klebsiella pneumoniae strain TK421]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment