Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DEIMA_RS08615 Genome accession   NC_014958
Coordinates   1831718..1832248 (-) Length   176 a.a.
NCBI ID   WP_342622106.1    Uniprot ID   -
Organism   Deinococcus maricopensis DSM 21211     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826718..1837248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIMA_RS08585 (Deima_1696) - 1828435..1829406 (+) 972 WP_013556850.1 Ig domain-containing protein -
  DEIMA_RS08590 (Deima_1697) - 1829406..1829855 (+) 450 WP_013556851.1 hypothetical protein -
  DEIMA_RS18245 (Deima_1698) - 1829852..1830367 (+) 516 WP_013556852.1 hypothetical protein -
  DEIMA_RS08600 (Deima_1699) - 1830424..1830834 (-) 411 WP_013556853.1 hypothetical protein -
  DEIMA_RS08605 (Deima_1700) - 1830934..1831128 (+) 195 WP_013556854.1 RNA-binding S4 domain-containing protein -
  DEIMA_RS08610 (Deima_1701) - 1831125..1831661 (+) 537 WP_013556855.1 DUF1684 domain-containing protein -
  DEIMA_RS08615 (Deima_1702) comF 1831718..1832248 (-) 531 WP_342622106.1 phosphoribosyltransferase family protein Machinery gene
  DEIMA_RS08620 (Deima_1703) - 1832352..1832867 (-) 516 WP_245528305.1 hypothetical protein -
  DEIMA_RS08625 (Deima_1704) - 1832940..1834358 (+) 1419 WP_013556858.1 PLP-dependent aminotransferase family protein -
  DEIMA_RS08630 (Deima_1705) - 1834399..1835370 (-) 972 WP_013556859.1 SDR family oxidoreductase -
  DEIMA_RS08635 (Deima_1706) - 1835492..1835701 (+) 210 WP_013556860.1 hypothetical protein -
  DEIMA_RS08640 (Deima_1707) - 1835768..1836085 (-) 318 WP_013556861.1 hypothetical protein -
  DEIMA_RS08645 (Deima_1708) - 1836162..1836845 (+) 684 WP_013556862.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18456.40 Da        Isoelectric Point: 11.6461

>NTDB_id=39602 DEIMA_RS08615 WP_342622106.1 1831718..1832248(-) (comF) [Deinococcus maricopensis DSM 21211]
MALLHAQVSAHSPLTREVTPHLVSLGTYRGVVRRAVRDLKYAGARDVSVPLGVALARGVPPAWAVEVVTSVPMPRAREAE
RGFNQSALLGRVIARELGVPYLPLLARTSAQAGQQAKVSGSERRAHLAGAFRAVATPPARVLLVDDVLTSGTTLAECAAA
LTAAGAQEIRFAVVAR

Nucleotide


Download         Length: 531 bp        

>NTDB_id=39602 DEIMA_RS08615 WP_342622106.1 1831718..1832248(-) (comF) [Deinococcus maricopensis DSM 21211]
GTGGCGCTGCTGCACGCGCAGGTGAGTGCGCACAGTCCGCTCACGCGGGAGGTGACGCCTCATCTCGTGAGCCTGGGGAC
GTATAGGGGTGTGGTGCGCCGGGCGGTGCGGGACCTGAAGTATGCGGGCGCGCGCGACGTGAGCGTGCCGTTGGGGGTGG
CGCTCGCGCGGGGCGTACCGCCGGCGTGGGCGGTGGAGGTTGTGACGAGCGTGCCGATGCCGCGCGCGCGGGAGGCGGAG
CGCGGGTTCAACCAGTCGGCGCTGCTGGGGCGGGTGATCGCGCGGGAACTGGGCGTGCCGTACCTGCCGCTGCTGGCGCG
GACGAGCGCGCAGGCGGGGCAGCAGGCCAAGGTGAGTGGCAGCGAGCGGCGCGCGCACCTGGCGGGGGCGTTCCGGGCGG
TGGCGACGCCGCCGGCGCGGGTGCTGCTGGTGGATGACGTCCTGACGTCCGGGACGACGCTGGCCGAGTGCGCGGCGGCG
CTCACGGCGGCGGGCGCGCAGGAGATTCGGTTCGCGGTGGTCGCACGGTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(87-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.062

100

0.574

Multiple sequence alignment