Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F8D37_RS16580 Genome accession   NZ_CP045674
Coordinates   3463493..3464089 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain WSD411     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458493..3469089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8D37_RS16565 helD 3458701..3460755 (-) 2055 WP_020324408.1 DNA helicase IV -
  F8D37_RS16570 - 3460880..3461326 (+) 447 WP_002898425.1 YccF domain-containing protein -
  F8D37_RS16575 yccS 3461344..3463479 (+) 2136 WP_004147856.1 YccS family putative transporter -
  F8D37_RS16580 sxy/tfoX 3463493..3464089 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  F8D37_RS16585 sulA 3464438..3464947 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  F8D37_RS16590 ompA 3465300..3466376 (+) 1077 WP_032432880.1 porin OmpA -
  F8D37_RS16595 matP 3466508..3466960 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  F8D37_RS16600 - 3467146..3468903 (+) 1758 WP_020324406.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=395997 F8D37_RS16580 WP_004179217.1 3463493..3464089(-) (sxy/tfoX) [Klebsiella pneumoniae strain WSD411]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=395997 F8D37_RS16580 WP_004179217.1 3463493..3464089(-) (sxy/tfoX) [Klebsiella pneumoniae strain WSD411]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment