Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DYQ05_RS01715 Genome accession   NZ_CP045670
Coordinates   375131..376045 (+) Length   304 a.a.
NCBI ID   WP_206183717.1    Uniprot ID   -
Organism   Treponema pedis strain T3552B     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 370131..381045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYQ05_RS01695 (DYQ05_01720) - 371605..371892 (+) 288 WP_206183714.1 hypothetical protein -
  DYQ05_RS01700 (DYQ05_01725) - 371913..372530 (+) 618 WP_252723473.1 DUF4340 domain-containing protein -
  DYQ05_RS01705 (DYQ05_01730) - 372527..374254 (+) 1728 WP_206183715.1 ABC transporter ATP-binding protein -
  DYQ05_RS01710 - 374256..375062 (+) 807 WP_206183716.1 ABC transporter ATP-binding protein -
  DYQ05_RS01715 rcrQ 375131..376045 (+) 915 WP_206183717.1 ATP-binding cassette domain-containing protein Regulator
  DYQ05_RS01720 (DYQ05_01740) - 376136..376738 (+) 603 WP_029410385.1 carboxypeptidase-like regulatory domain-containing protein -
  DYQ05_RS01725 (DYQ05_01745) - 376745..377800 (+) 1056 WP_206183718.1 dihydroorotase family protein -
  DYQ05_RS01730 (DYQ05_01750) - 377860..379074 (-) 1215 WP_206183719.1 DUF1343 domain-containing protein -
  DYQ05_RS01735 (DYQ05_01755) pbp4b 379071..381020 (-) 1950 WP_024470197.1 penicillin binding protein PBP4B -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33623.83 Da        Isoelectric Point: 8.0123

>NTDB_id=395973 DYQ05_RS01715 WP_206183717.1 375131..376045(+) (rcrQ) [Treponema pedis strain T3552B]
MLSSFILYSRMFSGPINEFANILGDLLSAASAAERIFALIDSPSEKDEVSDYINLKNIKGNIKFENVSFSYGCEKIGNAK
LVIDNLNFEAEAGSLMAIVGETGAGKSTVINLLLRFYEVQNGTIYLDNIPITKIKRNFLRKSFALVMQEAWLFEGSIRDN
ISYGKSDASIEEIHRAAVAAGIADFIKSLPDGYDTVIKDSAVNISQGQKQLLTIARAMLLDAPFLILDEATSNVDSQTEI
LVHKAMQKLLKGRTAFVIAHRLSTIQNADKILVMQKGRIIEQGSHTELLKKNGKYSKLYMSQIK

Nucleotide


Download         Length: 915 bp        

>NTDB_id=395973 DYQ05_RS01715 WP_206183717.1 375131..376045(+) (rcrQ) [Treponema pedis strain T3552B]
ATGCTTTCTTCTTTTATTTTATATTCCAGAATGTTTTCAGGCCCGATAAATGAGTTTGCAAACATTTTAGGCGATTTACT
TTCAGCGGCTTCTGCGGCGGAGCGGATTTTTGCTTTAATCGACAGCCCTTCCGAAAAAGACGAAGTTTCCGATTATATAA
ATTTAAAAAATATTAAGGGTAATATTAAATTCGAAAATGTTTCGTTTTCATACGGTTGTGAAAAGATAGGGAATGCAAAA
CTTGTTATAGATAATTTAAATTTTGAAGCGGAAGCTGGCAGTTTGATGGCAATTGTCGGAGAAACGGGAGCAGGGAAAAG
CACGGTAATAAATTTACTTTTAAGATTTTATGAAGTACAAAACGGAACTATTTATTTGGATAATATTCCTATTACAAAAA
TTAAAAGAAATTTTTTACGCAAATCTTTTGCTCTAGTTATGCAGGAAGCTTGGCTTTTTGAAGGCTCCATACGCGATAAT
ATTTCTTACGGTAAAAGCGACGCTTCTATTGAAGAAATTCATAGAGCGGCCGTTGCTGCCGGTATTGCGGATTTTATTAA
AAGCCTTCCTGACGGATACGATACCGTTATAAAAGATTCGGCTGTAAATATTTCGCAAGGGCAAAAACAATTGCTTACTA
TTGCACGTGCGATGCTTTTAGATGCGCCTTTTTTAATTTTAGATGAAGCAACTTCAAATGTGGACAGTCAAACTGAAATA
CTTGTTCATAAAGCTATGCAAAAATTATTAAAAGGCAGAACTGCCTTTGTTATTGCACACAGACTTTCAACAATTCAAAA
TGCCGATAAAATTCTTGTTATGCAAAAGGGTAGAATTATAGAACAAGGTTCTCATACTGAACTTTTGAAAAAAAACGGAA
AATACTCAAAACTTTATATGAGTCAAATAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(84-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

49.833

98.355

0.49
  comA/nlmT Streptococcus mutans UA159

38.908

96.382

0.375

Multiple sequence alignment