Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GFH31_RS07995 Genome accession   NZ_CP045651
Coordinates   1880487..1881869 (-) Length   460 a.a.
NCBI ID   WP_153497753.1    Uniprot ID   -
Organism   Alistipes sp. dk3624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1875487..1886869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH31_RS07970 (GFH31_07975) - 1876796..1877956 (+) 1161 WP_055202794.1 ATP-binding protein -
  GFH31_RS07975 (GFH31_07980) - 1877963..1878793 (+) 831 WP_153497752.1 DUF4271 domain-containing protein -
  GFH31_RS07980 (GFH31_07985) - 1878873..1879811 (+) 939 WP_118457101.1 uroporphyrinogen-III synthase -
  GFH31_RS07985 (GFH31_07990) - 1879822..1880220 (+) 399 WP_228385738.1 ribonuclease P protein component -
  GFH31_RS07990 (GFH31_07995) yidD 1880177..1880437 (+) 261 WP_101571933.1 membrane protein insertion efficiency factor YidD -
  GFH31_RS07995 (GFH31_08000) radA 1880487..1881869 (-) 1383 WP_153497753.1 DNA repair protein RadA Machinery gene
  GFH31_RS08000 (GFH31_08005) rseP 1881886..1883217 (-) 1332 WP_118457097.1 RIP metalloprotease RseP -
  GFH31_RS08005 (GFH31_08010) - 1883253..1884407 (-) 1155 WP_153497754.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  GFH31_RS08010 (GFH31_08015) - 1884462..1885337 (-) 876 WP_055203539.1 murein hydrolase activator EnvC family protein -
  GFH31_RS08015 (GFH31_08020) - 1885602..1886516 (+) 915 WP_172970724.1 NDP-sugar synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50041.41 Da        Isoelectric Point: 7.3251

>NTDB_id=395938 GFH31_RS07995 WP_153497753.1 1880487..1881869(-) (radA) [Alistipes sp. dk3624]
MAKLKKAFFCRSCGYESTKWVGKCPACGEWNTLVEEVVGKESSRTTSFAPARGSNRPVPVHEIERQAFTRTDLANGEVNR
VLGGGLVQGSIILLGGEPGIGKSTLSLQLALKAAGLKTLYVSGEESPHQIKMRAERIGIVNEACYIYSETNLENIITQIT
QHGPDLVVIDSIQTIYTETIDSSPGSVSQIRESAALLQKYAKQTGTSIIVIGHITKDGIIAGPKILEHIVDVVLQFEGDN
NNIYRILRSIKNRFGATFEIGVFEMRGEGLIEVDNPSEILLSHYDEPLSGIAVGAAVDGARSYLIETQALVSTAAYGTPQ
RSATGFDSRRLNMLLAVLEKRIGLKMYQKDVFLNFAGGFKISDTGLDMSVIAAILSSYFDRPVDRETCFAGEIGLSGEVR
PAPRSEQRIGEAARLGFRRIVVSGYLRKSLPKPPKGIEVVYINKLEELGRIVFGVSGPVE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=395938 GFH31_RS07995 WP_153497753.1 1880487..1881869(-) (radA) [Alistipes sp. dk3624]
ATGGCCAAATTAAAAAAAGCGTTTTTCTGCCGCAGTTGCGGGTACGAGTCGACCAAATGGGTCGGCAAATGCCCGGCGTG
CGGCGAGTGGAATACGCTGGTCGAAGAGGTCGTCGGCAAGGAATCGTCGCGTACGACCTCGTTCGCACCGGCGCGCGGCA
GCAACCGCCCCGTGCCGGTGCACGAGATCGAACGGCAGGCTTTCACGCGCACCGACCTGGCCAACGGCGAGGTGAATCGC
GTGCTGGGCGGCGGCCTGGTGCAGGGCTCGATCATCCTGCTGGGCGGCGAACCGGGCATCGGCAAATCGACGCTGAGCCT
GCAACTCGCGCTGAAAGCCGCCGGGCTGAAAACGCTGTACGTATCGGGCGAGGAGTCCCCGCACCAGATCAAGATGCGGG
CCGAACGGATCGGTATCGTGAACGAAGCGTGCTACATTTACAGCGAGACGAACCTCGAAAACATCATCACCCAGATCACG
CAGCACGGCCCCGACCTGGTCGTGATCGATTCGATCCAGACAATTTACACCGAAACGATCGACTCGTCGCCGGGCAGCGT
GTCGCAGATCCGCGAATCGGCCGCCTTGCTGCAAAAATATGCCAAGCAGACCGGCACATCGATCATCGTAATCGGACACA
TCACCAAGGACGGCATCATCGCCGGTCCGAAAATCCTGGAACACATCGTCGACGTGGTGCTGCAATTCGAAGGCGACAAC
AACAACATCTACCGCATCCTGCGCAGCATCAAGAACCGGTTCGGAGCGACATTCGAGATCGGCGTATTCGAAATGCGCGG
CGAAGGGCTGATCGAGGTCGACAATCCGTCCGAAATCCTGTTGTCGCACTACGACGAACCGCTGAGCGGCATCGCCGTCG
GCGCGGCCGTCGACGGGGCCCGGTCATACCTGATCGAGACCCAGGCGCTGGTCAGCACGGCCGCCTACGGCACGCCGCAG
CGCTCGGCGACCGGATTCGACTCGCGGCGGCTGAACATGCTGCTGGCCGTACTCGAAAAACGGATCGGCCTGAAGATGTA
CCAGAAAGACGTCTTTTTAAATTTTGCGGGAGGGTTCAAGATCAGCGACACGGGGCTCGACATGAGCGTCATCGCGGCTA
TCCTGTCGTCGTATTTCGACCGGCCGGTAGACCGGGAAACCTGTTTCGCCGGAGAGATCGGCCTGTCCGGCGAAGTACGT
CCCGCTCCCCGCAGCGAACAACGCATCGGCGAAGCGGCCCGGCTCGGCTTCCGACGGATCGTCGTATCGGGCTATCTACG
CAAAAGCCTTCCGAAGCCGCCAAAAGGCATCGAAGTCGTCTATATCAACAAACTGGAAGAGCTGGGACGCATCGTCTTCG
GCGTTTCCGGGCCGGTCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-423)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.69

99.565

0.485
  radA Streptococcus mitis NCTC 12261

45.077

99.348

0.448
  radA Streptococcus mitis SK321

44.639

99.348

0.443
  radA Streptococcus pneumoniae Rx1

44.639

99.348

0.443
  radA Streptococcus pneumoniae D39

44.639

99.348

0.443
  radA Streptococcus pneumoniae R6

44.639

99.348

0.443
  radA Streptococcus pneumoniae TIGR4

44.639

99.348

0.443

Multiple sequence alignment