Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GFH30_RS11050 Genome accession   NZ_CP045650
Coordinates   2329040..2329897 (-) Length   285 a.a.
NCBI ID   WP_171501032.1    Uniprot ID   -
Organism   Acinetobacter wanghuae strain dk386     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2324040..2334897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH30_RS11035 (GFH30_11035) miaB 2325868..2327325 (+) 1458 WP_153372600.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GFH30_RS11040 (GFH30_11040) - 2327364..2328440 (+) 1077 WP_153372602.1 PhoH family protein -
  GFH30_RS11045 (GFH30_11045) ybeY 2328462..2328944 (+) 483 WP_153372604.1 rRNA maturation RNase YbeY -
  GFH30_RS11050 (GFH30_11050) tonB2 2329040..2329897 (-) 858 WP_171501032.1 energy transducer TonB Machinery gene
  GFH30_RS11055 (GFH30_11055) - 2330154..2330828 (+) 675 WP_153372608.1 hypothetical protein -
  GFH30_RS11060 (GFH30_11060) - 2330994..2331707 (+) 714 WP_153372610.1 DUF3108 domain-containing protein -
  GFH30_RS11065 (GFH30_11065) - 2331799..2332374 (+) 576 WP_153372612.1 xanthine phosphoribosyltransferase -
  GFH30_RS11070 (GFH30_11070) - 2332657..2333070 (+) 414 WP_227551498.1 hypothetical protein -
  GFH30_RS11075 (GFH30_11075) wrbA 2333115..2333711 (-) 597 WP_153372614.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32370.04 Da        Isoelectric Point: 8.3949

>NTDB_id=395916 GFH30_RS11050 WP_171501032.1 2329040..2329897(-) (tonB2) [Acinetobacter wanghuae strain dk386]
MPLMKSWWKDPIFTGAVIIAVALHIMLLALQFGMPQEQDAMSKEIAVTLRQADKEPEHADFLAQTNQQGSGEFREAHRMS
SDMPAPMLEQKAGESQQESLDMLEQKQQLSFEEKILMTTLSWQKQAEDAKRKKIQEQLNSQFQAKAAMVASLEAQYLQRQ
KNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPDAARAQKLAGEVRLMVILNQNGGIRAIRLIDSSGHGIL
DEAAKASVRKSAPFGAFDAKMSDISELRIIRTWRFDPADAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=395916 GFH30_RS11050 WP_171501032.1 2329040..2329897(-) (tonB2) [Acinetobacter wanghuae strain dk386]
ATGCCTTTGATGAAGTCTTGGTGGAAAGATCCCATTTTTACTGGGGCAGTGATTATTGCAGTTGCGTTGCACATCATGCT
GTTGGCATTACAATTTGGCATGCCGCAAGAGCAAGATGCCATGAGCAAAGAAATTGCAGTGACGCTTCGACAGGCAGACA
AAGAACCTGAGCATGCTGATTTTTTAGCGCAAACGAATCAGCAAGGGTCAGGCGAATTTCGAGAAGCGCATCGTATGTCG
AGCGATATGCCAGCGCCTATGCTTGAGCAAAAAGCAGGTGAGTCGCAACAAGAAAGCTTAGATATGCTCGAACAAAAGCA
ACAGCTCAGCTTTGAAGAAAAAATACTGATGACGACGCTCAGTTGGCAAAAACAAGCCGAAGATGCCAAGCGTAAAAAAA
TTCAAGAACAGCTCAATAGTCAGTTTCAAGCCAAAGCGGCAATGGTGGCAAGTTTGGAAGCTCAGTATTTACAACGTCAG
AAAAATTTTAGCCGTCAGCAAAAAATTAAAACCGTTGATGGAATTCAAGCCAAGCAAGATGTATCTGCTGCTTATTTAGA
AAAATTCCGTCAAAAAGTGGAATTTTACGGCAACCGTTTTTACCCCGATGCAGCACGTGCACAGAAGCTCGCGGGTGAAG
TTCGTCTTATGGTGATTTTGAATCAGAATGGCGGCATCCGCGCGATTCGTTTGATTGATTCATCAGGGCATGGCATTTTG
GATGAAGCTGCGAAAGCATCGGTACGTAAGTCCGCACCGTTTGGTGCATTTGATGCGAAAATGTCAGATATTTCAGAGCT
TCGTATTATTCGAACATGGCGTTTTGATCCGGCTGATGCAGAGTTTGAGGTGCGTTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(199-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

68.459

97.895

0.67

Multiple sequence alignment