Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPM96_RS16780 Genome accession   NZ_CP053852
Coordinates   3482138..3482653 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain CE1628     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3477138..3487653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPM96_RS16755 (HPM96_16750) ygaZ 3477537..3478274 (+) 738 WP_000445648.1 L-valine exporter subunit YgaZ -
  HPM96_RS16760 (HPM96_16755) ygaH 3478264..3478599 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  HPM96_RS16765 (HPM96_16760) emrR 3478690..3479220 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HPM96_RS16770 (HPM96_16765) emrA 3479347..3480519 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HPM96_RS16775 (HPM96_16770) emrB 3480536..3482074 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HPM96_RS16780 (HPM96_16775) luxS 3482138..3482653 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HPM96_RS16785 (HPM96_16780) gshA 3482803..3484359 (-) 1557 WP_000611781.1 glutamate--cysteine ligase -
  HPM96_RS16790 (HPM96_16785) yqaA 3484432..3484860 (-) 429 WP_001287454.1 YqaA family protein -
  HPM96_RS16795 (HPM96_16790) yqaB 3484857..3485423 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HPM96_RS16825 (HPM96_16820) csrA 3486589..3486774 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=395887 HPM96_RS16780 WP_001130208.1 3482138..3482653(-) (luxS) [Escherichia coli strain CE1628]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=395887 HPM96_RS16780 WP_001130208.1 3482138..3482653(-) (luxS) [Escherichia coli strain CE1628]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737