Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GFK26_RS11380 Genome accession   NZ_CP045644
Coordinates   2485345..2485743 (+) Length   132 a.a.
NCBI ID   WP_099792921.1    Uniprot ID   A0A2G6WX73
Organism   Variovorax paradoxus strain 5C-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2480345..2490743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFK26_RS11360 (GFK26_11410) - 2481916..2482392 (-) 477 WP_062479124.1 hypothetical protein -
  GFK26_RS11365 (GFK26_11415) hemL 2482731..2484011 (-) 1281 WP_153282061.1 glutamate-1-semialdehyde 2,1-aminomutase -
  GFK26_RS11370 (GFK26_11420) thiD 2484011..2484979 (-) 969 WP_153282062.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GFK26_RS11375 (GFK26_11425) - 2485091..2485261 (+) 171 WP_099792923.1 rubredoxin -
  GFK26_RS11380 (GFK26_11430) pilG 2485345..2485743 (+) 399 WP_099792921.1 response regulator Regulator
  GFK26_RS11385 (GFK26_11435) - 2485743..2486108 (+) 366 WP_062479114.1 response regulator -
  GFK26_RS11390 (GFK26_11440) - 2486128..2486661 (+) 534 WP_153282063.1 chemotaxis protein CheW -
  GFK26_RS11395 (GFK26_11445) - 2486704..2489037 (+) 2334 WP_153282064.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14736.90 Da        Isoelectric Point: 7.3215

>NTDB_id=395795 GFK26_RS11380 WP_099792921.1 2485345..2485743(+) (pilG) [Variovorax paradoxus strain 5C-2]
MSPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=395795 GFK26_RS11380 WP_099792921.1 2485345..2485743(+) (pilG) [Variovorax paradoxus strain 5C-2]
ATGAGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTTT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCCCACC
TGATTTTCTGCGACATCCTGATGCCTCGCCTCGACGGTTATCAGACCTGCGCCATCATCAAGCGCAACGCGCATTTCTCC
AATGTCCCGGTTGTCATGCTGTCTTCGAAAGACGGCGTGTTCGACAAGGCCCGCGGCCGCATGGTCGGGTCCCAAGACTA
TCTCACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATTGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G6WX73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment