Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPM97_RS03140 Genome accession   NZ_CP053851
Coordinates   667542..668147 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CE1803A     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 662542..673147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPM97_RS03120 (HPM97_03125) aes 662683..663642 (+) 960 WP_000801816.1 acetyl esterase -
  HPM97_RS03125 (HPM97_03130) hemH 663639..664601 (-) 963 WP_001250114.1 ferrochelatase -
  HPM97_RS03130 (HPM97_03135) adk 664733..665377 (-) 645 WP_001313630.1 adenylate kinase -
  HPM97_RS03135 (HPM97_03140) htpG 665558..667432 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HPM97_RS03140 (HPM97_03145) recR 667542..668147 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HPM97_RS03145 (HPM97_03150) ybaB 668147..668476 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HPM97_RS03150 (HPM97_03155) dnaX 668529..670460 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  HPM97_RS03155 (HPM97_03160) apt 670589..671140 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HPM97_RS03160 (HPM97_03165) ybaN 671293..671670 (-) 378 WP_001188905.1 DUF454 family protein -
  HPM97_RS03165 (HPM97_03170) priC 671740..672267 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  HPM97_RS03170 (HPM97_03175) rsmS 672281..672442 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HPM97_RS23285 - 672495..672593 (-) 99 Protein_629 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=395769 HPM97_RS03140 WP_001195025.1 667542..668147(-) (recR) [Escherichia coli strain CE1803A]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=395769 HPM97_RS03140 WP_001195025.1 667542..668147(-) (recR) [Escherichia coli strain CE1803A]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443