Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GFK78_RS15675 Genome accession   NZ_CP045641
Coordinates   3239855..3240451 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain KP18-31     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3234855..3245451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFK78_RS15660 (GFK78_16030) helD 3235066..3237120 (-) 2055 WP_099441725.1 DNA helicase IV -
  GFK78_RS15665 (GFK78_16035) - 3237245..3237691 (+) 447 WP_004201437.1 YccF domain-containing protein -
  GFK78_RS15670 (GFK78_16040) yccS 3237709..3239844 (+) 2136 WP_004201435.1 YccS family putative transporter -
  GFK78_RS15675 (GFK78_16045) sxy/tfoX 3239855..3240451 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  GFK78_RS15680 (GFK78_16055) sulA 3240800..3241309 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  GFK78_RS15685 (GFK78_16060) ompA 3241662..3242732 (+) 1071 WP_004201430.1 porin OmpA -
  GFK78_RS15690 (GFK78_16065) matP 3242943..3243395 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  GFK78_RS15695 (GFK78_16070) - 3243581..3245338 (+) 1758 WP_017899459.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=395752 GFK78_RS15675 WP_004201433.1 3239855..3240451(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KP18-31]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=395752 GFK78_RS15675 WP_004201433.1 3239855..3240451(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KP18-31]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTGAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCGCTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment