Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPY10_RS08925 Genome accession   NZ_CP053822
Coordinates   1994440..1995042 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain E7G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989440..2000042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY10_RS08895 (HPY10_08945) - 1989627..1990085 (-) 459 WP_000923262.1 Lrp/AsnC family transcriptional regulator -
  HPY10_RS08900 (HPY10_08950) - 1990207..1991274 (+) 1068 WP_000337333.1 PLP-dependent cysteine synthase family protein -
  HPY10_RS08905 (HPY10_08955) sohB 1991429..1992490 (-) 1062 WP_175246133.1 protease SohB -
  HPY10_RS08910 (HPY10_08960) - 1992649..1993392 (+) 744 WP_001109956.1 YciK family oxidoreductase -
  HPY10_RS08915 (HPY10_08965) - 1993486..1993923 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  HPY10_RS08920 (HPY10_08970) - 1994065..1994313 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  HPY10_RS08925 (HPY10_08975) recR 1994440..1995042 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  HPY10_RS08930 (HPY10_08980) - 1995057..1995386 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  HPY10_RS08935 (HPY10_08985) dnaX 1995457..1997535 (-) 2079 WP_175246134.1 DNA polymerase III subunit gamma/tau -
  HPY10_RS08940 (HPY10_08990) apt 1997554..1998099 (-) 546 WP_175247541.1 adenine phosphoribosyltransferase -
  HPY10_RS08945 (HPY10_08995) - 1998231..1998629 (-) 399 WP_001880857.1 YbaN family protein -
  HPY10_RS20410 - 1998629..1998760 (-) 132 WP_000013199.1 hypothetical protein -
  HPY10_RS08950 (HPY10_09000) - 1998930..2000021 (-) 1092 WP_032477943.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=395727 HPY10_RS08925 WP_001260579.1 1994440..1995042(-) (recR) [Vibrio cholerae strain E7G]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=395727 HPY10_RS08925 WP_001260579.1 1994440..1995042(-) (recR) [Vibrio cholerae strain E7G]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGTCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCTGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAGC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44