Detailed information NTG0395688

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: GFH35_RS16490
• Genome accession: NZ_CP045612
• Coordinates: 4227655..4229022 (-)
• Length: 455 a.a.
• NCBI ID: WP_004315266.1
• Uniprot ID: A0A943J827
• Organism: Bacteroides xylanisolvens strain funn3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4222655..4234022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFH35_RS16480 (GFH35_16945)	-	4225306..4225908 (-)	603	WP_203462990.1	response regulator transcription factor	-
GFH35_RS16485 (GFH35_16950)	-	4225925..4227574 (-)	1650	WP_087319003.1	NAD(P)/FAD-dependent oxidoreductase	-
GFH35_RS16490 (GFH35_16955)	radA	4227655..4229022 (-)	1368	WP_004315266.1	DNA repair protein RadA	Machinery gene
GFH35_RS16495 (GFH35_16960)	-	4229034..4230233 (-)	1200	WP_008025260.1	ATP-binding protein	-
GFH35_RS16500 (GFH35_16965)	-	4230337..4231374 (-)	1038	WP_004315264.1	asparaginase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50112.72 Da
• Isoelectric Point: 5.9344

>NTDB_id=395688 GFH35_RS16490 WP_004315266.1 4227655..4229022(-) (radA) [Bacteroides xylanisolvens strain funn3]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLALSDIEADDEPRINMHDDELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTKKLKIELVPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=395688 GFH35_RS16490 WP_004315266.1 4227655..4229022(-) (radA) [Bacteroides xylanisolvens strain funn3]
ATGGCAAAAGAGAAAACCGTATATGTATGCAGTAATTGCGGACAGGATTCACCGAAATGGGTGGGTAAATGTCCGTCGTG
TGGAGAATGGAATACGTATGTTGAGGAAATCGTACGGAAAGAACCTACCAACCGCCGTCCGGTGTCGGGCATTGAAACAC
AGAAACCCAAACCACTGGCACTTAGCGATATTGAAGCGGACGACGAGCCACGCATCAATATGCACGATGATGAATTGAAT
CGCGTATTGGGTGGCGGACTTGTGCCGGGTTCTCTTGTCCTGATAGGCGGTGAGCCGGGAATCGGTAAATCCACGCTCGT
CATGCAGACCGTACTGCACATGCCGGAAAAGAAAATCCTTTATGTGTCCGGTGAAGAAAGTGCACGACAGCTTAAACTCC
GTGCCGATCGTCTCTCTGATACTTCCAGCGATTGCCTGATTGTTTGTGAGACTTCGCTCGAACAAATTTATGTGCATATC
AAGAATACGAATCCCGATTTAGTGATTATTGACTCTATACAGACTATTTCCACCGAGAGTATCGAATCATCTCCCGGAAG
TATTGCGCAAGTCAGAGAGTGTTCGGCATCTATTCTTCGTTTCGCGAAAGAAACGCATACCCCTGTGTTGCTGATCGGTC
ATATTAATAAAGAAGGAAGTATTGCAGGACCTAAAGTGCTGGAACATATCGTAGATACCGTTCTTCAATTTGAAGGCGAC
CAGCATTATATGTATCGTATTCTGCGCAGCATCAAGAATCGTTTCGGCAGTACGGCAGAGTTAGGGATTTATGAAATGCG
TCAGGATGGGTTGCGCCAGGTGAATAATCCTTCCGAGCTTTTGCTTAGTCAGGACCATGAGGGAATGAGTGGAGTAGCTA
TTGCTTCCGCTATCGAAGGAATCCGCCCGTTCTTGATCGAGACACAGGCTTTGGTCAGTTCTGCTGTTTATGGAAATCCT
CAACGTTCGGCAACCGGTTTCGATTTAAGAAGAATGAATATGCTGCTGGCTGTTCTCGAAAAGCGTGTCGGATTCAAGTT
GGCACAGAAAGATGTGTTCCTGAATATTGCCGGAGGACTGAAGGTGAATGACCCGGCTATCGACTTGCCGGTTATCAGTG
CCATCCTTTCTTCCAATATGGACGCAGCCATTGAGCCGGAAGTTTGCATGGCGGGAGAAATCGGACTGTCGGGAGAGATA
CGTCCTGTAAATCGAATAGAGCAACGTATCGGTGAAGCCGAGAAATTGGGTTTTAAACGGTTCTTGTTGCCAAAATATAA
TTTGCAAGGGATTGACACTAAGAAATTGAAGATCGAGTTAGTTCCGGTGAGAAAGGTAGAAGAAGCATTCAGAGCTCTAT
TCGGATAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (58-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.522	100	0.521
radA	Streptococcus mitis SK321	47.912	100	0.479
radA	Streptococcus pneumoniae Rx1	47.912	100	0.479
radA	Streptococcus pneumoniae D39	47.912	100	0.479
radA	Streptococcus pneumoniae R6	47.912	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.479
radA	Streptococcus mitis NCTC 12261	47.912	100	0.479