Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GE376_RS21175 Genome accession   NZ_CP045606
Coordinates   4217455..4219194 (-) Length   579 a.a.
NCBI ID   WP_000947734.1    Uniprot ID   A0A9X5W4K1
Organism   Bacillus cereus strain SB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4212455..4224194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE376_RS21145 (GE376_21620) - 4212693..4212926 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  GE376_RS21150 (GE376_21625) - 4212976..4213704 (-) 729 WP_000172589.1 glycerophosphodiester phosphodiesterase -
  GE376_RS21155 (GE376_21630) - 4213755..4213901 (+) 147 WP_001247671.1 YycC family protein -
  GE376_RS21160 (GE376_21635) - 4214141..4214704 (-) 564 WP_000790987.1 PRK06770 family protein -
  GE376_RS21165 (GE376_21640) spo0A 4214956..4215750 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  GE376_RS21170 (GE376_21650) spoIVB 4216038..4217336 (-) 1299 WP_063548618.1 SpoIVB peptidase -
  GE376_RS21175 (GE376_21655) recN 4217455..4219194 (-) 1740 WP_000947734.1 DNA repair protein RecN Machinery gene
  GE376_RS21180 (GE376_21660) argR 4219459..4219908 (-) 450 WP_001032580.1 arginine repressor ArgR -
  GE376_RS21185 (GE376_21665) - 4220051..4220890 (-) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  GE376_RS21190 (GE376_21670) dxs 4220894..4222786 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GE376_RS21195 (GE376_21675) ispA 4223088..4223978 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65839.94 Da        Isoelectric Point: 4.8260

>NTDB_id=395643 GE376_RS21175 WP_000947734.1 4217455..4219194(-) (recN) [Bacillus cereus strain SB1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=395643 GE376_RS21175 WP_000947734.1 4217455..4219194(-) (recN) [Bacillus cereus strain SB1]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTGTTTTATGTTGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAACTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAGAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAAGCCGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCATTAGGTGATGCATATCGTTCATTGAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCATATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAAGAAATATTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAACCCCTTGTAGAAGGTGCACCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCGACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCTGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACGGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment