Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SGGB_RS06645 Genome accession   NC_017576
Coordinates   1327587..1328027 (-) Length   146 a.a.
NCBI ID   WP_012962070.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1322587..1333027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS06630 (SGGB_1281) - 1322764..1323741 (-) 978 WP_012962067.1 alcohol dehydrogenase catalytic domain-containing protein -
  SGGB_RS06635 (SGGB_1282) rcrQ 1324007..1325779 (-) 1773 WP_012962068.1 ABC transporter ATP-binding protein Regulator
  SGGB_RS06640 (SGGB_1283) rcrP 1325769..1327583 (-) 1815 WP_012962069.1 ABC transporter ATP-binding protein Regulator
  SGGB_RS06645 (SGGB_1284) rcrR 1327587..1328027 (-) 441 WP_012962070.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SGGB_RS06650 (SGGB_1285) - 1328202..1328612 (-) 411 WP_012962071.1 peptide deformylase -
  SGGB_RS06655 (SGGB_1286) - 1328609..1329118 (-) 510 WP_012962072.1 GNAT family N-acetyltransferase -
  SGGB_RS06660 (SGGB_1287) gdhA 1329385..1330734 (-) 1350 WP_012962073.1 NADP-specific glutamate dehydrogenase -
  SGGB_RS06665 (SGGB_1288) - 1330981..1331478 (+) 498 WP_009854399.1 DUF308 domain-containing protein -
  SGGB_RS12085 (SGGB_1289) queF 1331535..1332026 (-) 492 WP_012962074.1 preQ(1) synthase -
  SGGB_RS12090 (SGGB_1290) queE 1332039..1332752 (-) 714 WP_014620163.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17156.66 Da        Isoelectric Point: 9.3565

>NTDB_id=39563 SGGB_RS06645 WP_012962070.1 1327587..1328027(-) (rcrR) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MHKKDPFSQFRDFINLMENRVHALAESHGVENLAGPQGFAVMYLRDNPDKEIYIKDIEKRLRISKSVTSNLIKRMEKNGF
IQVVSSKEDKRYKQVVLTELGKSKAQDIQDFHDEMHRQILAGVDHEDLKISFRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=39563 SGGB_RS06645 WP_012962070.1 1327587..1328027(-) (rcrR) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGCACAAGAAAGATCCGTTTTCACAGTTTAGGGATTTTATCAATTTAATGGAAAATCGTGTCCACGCTCTTGCGGAAAG
TCATGGTGTTGAAAATCTAGCTGGTCCACAGGGATTTGCAGTGATGTATCTTCGTGATAATCCCGATAAAGAAATTTATA
TTAAGGACATTGAGAAGAGACTAAGAATTTCAAAGTCAGTGACTAGTAATTTGATTAAGCGCATGGAGAAAAATGGTTTT
ATCCAAGTTGTTTCGTCAAAAGAAGATAAGCGTTATAAGCAAGTTGTGTTGACTGAGCTTGGAAAATCAAAGGCTCAGGA
TATTCAAGATTTCCATGATGAAATGCATAGGCAAATCTTAGCTGGTGTTGACCATGAGGATCTCAAAATCTCGTTTCGCG
TCTTTGACCGCATTTTGAAAAATTTAGAAAACAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.643

97.945

0.555

Multiple sequence alignment