Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GFB67_RS09045 Genome accession   NZ_CP045604
Coordinates   1714494..1716296 (+) Length   600 a.a.
NCBI ID   WP_003624726.1    Uniprot ID   A0AAV5PF04
Organism   Lactobacillus delbrueckii strain P3MRA     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709494..1721296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB67_RS09025 (GFB67_08955) - 1710897..1711274 (-) 378 WP_003621149.1 hypothetical protein -
  GFB67_RS09030 (GFB67_08960) - 1711393..1712532 (-) 1140 WP_194846065.1 LCP family protein -
  GFB67_RS09040 (GFB67_08965) - 1712873..1714171 (+) 1299 WP_194846066.1 RNA-guided endonuclease InsQ/TnpB family protein -
  GFB67_RS09045 (GFB67_08970) pepF 1714494..1716296 (+) 1803 WP_003624726.1 oligoendopeptidase F Regulator
  GFB67_RS09050 (GFB67_08975) - 1716366..1716998 (-) 633 Protein_1736 alpha-hydroxy-acid oxidizing protein -
  GFB67_RS09055 - 1717125..1717295 (+) 171 WP_193699252.1 hypothetical protein -
  GFB67_RS10360 - 1717270..1717554 (-) 285 WP_227671834.1 TcaA 3rd/4th domain-containing protein -
  GFB67_RS10365 - 1717654..1717818 (-) 165 WP_227671835.1 zinc-ribbon domain-containing protein -
  GFB67_RS09065 (GFB67_08985) - 1717955..1718752 (-) 798 WP_003621140.1 metal ABC transporter permease -
  GFB67_RS09070 (GFB67_08990) - 1718752..1719405 (-) 654 WP_003621138.1 metal ABC transporter ATP-binding protein -
  GFB67_RS09075 (GFB67_08995) - 1719431..1720231 (-) 801 WP_003621136.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68242.06 Da        Isoelectric Point: 4.4766

>NTDB_id=395591 GFB67_RS09045 WP_003624726.1 1714494..1716296(+) (pepF) [Lactobacillus delbrueckii strain P3MRA]
MEIPYRSEVPKEQTWDLTRVFKTEADWEAAFKAVKQEVKALPALEDGFTESAAVLYDRLTQIFAVDRRLSKIYVYASMAS
DVDTSNQKKLALNSRGQSLAAEYQAAVAFIQPAVLALGKEALDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSA
AGDALSASANTFNVLTNSDLQFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAGYGQFASTFASTLAGNVKA
HNFDAQTHHYQDALAAALSENNIPVDVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQMWDMYVPITGKPSLSYTFAE
AKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSGAYSGGAYDTDAYVLLNWQGDLDSLYTLVHETGHSVHSMYT
RENQPYVYGDYPIFVAEIASTTNENLLTNYFLDRVTDPKTRAFLLNYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT
ADYLCGFYDRLNQQYYGPAISLGSDIDLEWARIPHFYYNFYVYQYATGFAAATALANKITYGSQEDKEKYLDFLKSGSSD
YPINIMQKAGVDMTKSDYLEDAFKVFAERLDEFTDLIKKL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=395591 GFB67_RS09045 WP_003624726.1 1714494..1716296(+) (pepF) [Lactobacillus delbrueckii strain P3MRA]
ATGGAAATCCCTTATCGCAGTGAGGTTCCCAAAGAACAGACCTGGGACTTGACCCGGGTCTTCAAGACTGAGGCGGACTG
GGAGGCCGCCTTTAAAGCTGTCAAGCAGGAAGTCAAGGCCCTGCCGGCCTTGGAAGACGGCTTTACGGAGAGCGCGGCCG
TCCTCTATGACCGCTTGACCCAGATTTTTGCCGTTGACCGCCGCCTGTCCAAGATCTACGTCTATGCCAGCATGGCCAGC
GACGTCGACACCAGCAACCAGAAGAAGCTGGCCCTCAATTCCCGCGGCCAGAGCCTGGCCGCTGAATACCAGGCGGCTGT
TGCCTTCATTCAGCCGGCTGTTTTAGCCTTGGGGAAAGAGGCCCTGGACGCCTTTTTCAAGGAAGAGCCAAGACTGGAAA
ACTACCGGCACTATTTGGAACAGATCGTCAAGCAGGAAGAGCACGTTTTGCCAGCTGAAGAGGAGAAGCTGGTATCGGCG
GCCGGGGATGCCCTGTCAGCTTCGGCCAACACCTTCAACGTCTTGACCAACTCCGATTTGCAATTCCCTTACATTGAAGA
TGAAGACGGGGAAGCAGTGGAACTGACGGAAGCCAACTACGACATCTTGATCCAGTCCCAGAACCGGGAAGTCAGAGAGG
ACGCCTTTGACGCCCTTTACGCTGGCTACGGCCAATTCGCGTCAACTTTTGCCTCAACCTTGGCCGGCAATGTCAAGGCC
CACAACTTTGATGCCCAGACCCACCACTACCAGGACGCCTTAGCCGCGGCTCTGTCAGAAAACAACATCCCTGTCGACGT
ATACAACCAGCTTTTGACTAGCGTCCACAAGCACCTGGACCTCCTCCACCGCTATGTCAACTTGCGCGAAGAGATCCTGG
ACCTGAAGGGCGACCTGCAAATGTGGGACATGTACGTGCCGATCACGGGCAAGCCAAGCCTCAGCTACACTTTCGCTGAA
GCCAAGGCCCAGGCCAGAGAGGCCCTGCAGGTTTTGGGCGAGGACTATGTCAAACACGTCGACTACCTCTTCAATAACCG
CTGCATCGACCACGTGGCTAACATGCACAAGCAAAGCGGGGCCTACTCCGGCGGGGCTTATGACACCGACGCCTATGTGC
TCTTGAACTGGCAGGGGGACCTGGATTCCCTCTACACCCTGGTCCACGAGACCGGCCACTCAGTCCACAGCATGTACACC
CGGGAAAACCAGCCATACGTGTATGGGGACTATCCGATCTTTGTCGCGGAAATTGCCTCAACGACCAATGAAAACCTGCT
GACCAACTACTTCCTGGACCGGGTGACGGATCCAAAGACCCGGGCCTTCCTGCTCAACTACTACTTGAGCTCCTTTAAGG
GAACGGTCTACCGGCAGACCCAGTTCGCGGAATTCGAGAAGTTCATTCATGAAAGCGACCAGGCGGGTGAAGCCTTGACG
GCTGACTACCTGTGCGGCTTCTACGACCGGCTCAACCAGCAGTACTACGGTCCGGCGATCAGCCTGGGCAGCGACATCGA
CCTGGAATGGGCCCGGATCCCCCACTTCTATTACAACTTCTACGTCTACCAGTACGCGACCGGCTTTGCCGCGGCGACTG
CCCTGGCTAACAAGATTACTTACGGCAGCCAGGAAGACAAGGAGAAGTACCTGGACTTCCTTAAGTCCGGCTCCAGCGAC
TACCCGATCAACATCATGCAGAAGGCCGGCGTCGACATGACCAAGTCCGACTACCTGGAAGATGCCTTCAAGGTCTTTGC
GGAAAGACTGGACGAATTTACTGACTTAATCAAAAAATTGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-182)

Peptidase family M3 (Peptidase_M3)

(203-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

99

0.493

Multiple sequence alignment