Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GFB67_RS07725 Genome accession   NZ_CP045604
Coordinates   1494967..1496343 (-) Length   458 a.a.
NCBI ID   WP_014565235.1    Uniprot ID   A0A6G6GUF0
Organism   Lactobacillus delbrueckii strain P3MRA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1489967..1501343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB67_RS07710 (GFB67_07625) - 1492548..1493636 (-) 1089 Protein_1509 EAL domain-containing protein -
  GFB67_RS07720 (GFB67_07635) - 1493910..1494857 (-) 948 WP_003618260.1 glycosyltransferase family 8 protein -
  GFB67_RS07725 (GFB67_07640) radA 1494967..1496343 (-) 1377 WP_014565235.1 DNA repair protein RadA Machinery gene
  GFB67_RS07730 (GFB67_07645) - 1496343..1496897 (-) 555 WP_003612504.1 dUTP diphosphatase -
  GFB67_RS07735 (GFB67_07650) - 1497004..1497291 (+) 288 WP_003618267.1 hypothetical protein -
  GFB67_RS07740 (GFB67_07655) pepC 1497376..1498725 (+) 1350 WP_194846014.1 aminopeptidase C -
  GFB67_RS07745 (GFB67_07660) - 1498791..1499003 (-) 213 WP_014565238.1 hypothetical protein -
  GFB67_RS07750 (GFB67_07665) - 1499078..1500013 (-) 936 WP_011544168.1 AAA family ATPase -
  GFB67_RS07755 (GFB67_07670) fabZ 1500126..1500587 (-) 462 WP_003618306.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50051.54 Da        Isoelectric Point: 6.6143

>NTDB_id=395590 GFB67_RS07725 WP_014565235.1 1494967..1496343(-) (radA) [Lactobacillus delbrueckii strain P3MRA]
MARARTQYKCRSCGYISASYLGRCPNCGAWNQFEKESQEVRQTSTKATPSRLMASVGAKEAVKMSTVKAEKEERVLTKSS
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKYKVLYVSGEESASQIKLRADRLGLGQSPMLLYPESNMEHI
RDQIDDVKPDFVVIDSIQTMNEPSLDSMVGSASQVREVTAELMKIAKLDQVTVFVIGHVTKEGSIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMKTEGLAEVTNPSALFLDERLPDSTGSAVVVSLEGTRPILGEIQALVTPTA
FGYAKRTTSGLDYNRVSLLLAVLEKRGNLMLQNQDAYLSATGGIRLNEPAIDLAIAMAIASSYYDKEISATDCFVGEIGL
TGEVRRVNQIQARVKEAGKVGFKRIFIPKYNMSPALQDLGIEVIPVSSVRQALHYLFS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=395590 GFB67_RS07725 WP_014565235.1 1494967..1496343(-) (radA) [Lactobacillus delbrueckii strain P3MRA]
ATGGCCAGAGCTAGAACCCAGTATAAGTGCCGGTCTTGCGGCTACATCTCCGCTTCTTACCTGGGCCGGTGCCCGAACTG
CGGGGCCTGGAACCAGTTTGAAAAAGAAAGCCAGGAGGTCCGCCAGACTTCTACTAAAGCTACCCCCAGCCGCCTGATGG
CCAGCGTGGGTGCTAAAGAAGCCGTTAAAATGTCCACCGTCAAGGCGGAAAAAGAAGAGCGGGTCTTAACCAAGTCCTCT
GAACTTAACCGGGTCTTAGGTGGCGGGATCGTACCAGGCTCTTTGGTCTTGATTGGCGGGGACCCCGGCATCGGCAAGTC
CACTTTGATGCTGCAGATCATGAGCGAACTGGCCGAAAAATACAAGGTCCTCTACGTCTCCGGGGAAGAATCTGCCAGCC
AGATCAAGCTACGGGCTGACCGCTTAGGCCTGGGCCAAAGCCCCATGCTTTTATACCCGGAAAGCAACATGGAACACATC
CGCGACCAGATCGACGACGTTAAGCCAGATTTTGTCGTGATCGACTCCATCCAGACCATGAATGAACCCAGCCTGGACTC
CATGGTGGGCTCAGCTTCCCAGGTCCGGGAAGTTACCGCCGAATTGATGAAGATCGCCAAGCTGGACCAGGTCACTGTCT
TTGTCATCGGCCACGTGACCAAGGAAGGGTCCATCGCCGGGCCGAAAATCCTGGAGCACATGGTTGACACCGTCCTTTAC
TTTGAAGGTGACGAGCACCATGCCTACCGGATCCTGCACTCAGTCAAGAACCGTTTTGGGGCGGCCAACGAAATCGGCAT
GTTTGAAATGAAGACCGAAGGCCTGGCAGAAGTGACCAATCCTTCCGCTCTCTTCTTAGATGAACGCTTGCCCGACTCAA
CTGGGTCAGCCGTGGTCGTTTCTTTAGAAGGCACCCGGCCGATCTTGGGCGAAATCCAGGCCCTGGTCACCCCAACCGCC
TTCGGCTATGCCAAGCGGACTACTTCGGGCCTGGACTACAACCGGGTCTCCCTGCTTTTAGCCGTTTTGGAAAAAAGGGG
GAACCTAATGCTGCAGAACCAGGACGCCTATTTATCAGCGACCGGTGGCATCCGCTTAAACGAACCGGCCATTGACCTGG
CCATCGCCATGGCCATTGCCTCCAGTTACTATGACAAGGAAATCTCCGCGACCGACTGCTTTGTCGGGGAAATCGGCCTG
ACCGGGGAAGTCCGCCGGGTCAACCAGATCCAGGCCCGGGTCAAGGAAGCCGGCAAGGTTGGCTTCAAGCGGATTTTTAT
CCCGAAATACAATATGAGCCCGGCCTTGCAGGATTTGGGGATTGAGGTAATTCCGGTCTCCAGCGTCCGCCAGGCCCTCC
ACTACCTTTTCTCATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(70-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6GUF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

56.114

100

0.561
  radA Streptococcus mitis NCTC 12261

56.114

100

0.561
  radA Streptococcus pneumoniae Rx1

56.114

100

0.561
  radA Streptococcus pneumoniae D39

56.114

100

0.561
  radA Streptococcus pneumoniae R6

56.114

100

0.561
  radA Streptococcus pneumoniae TIGR4

56.114

100

0.561
  radA Bacillus subtilis subsp. subtilis str. 168

55.604

99.345

0.552

Multiple sequence alignment