Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   HPY17_RS13020 Genome accession   NZ_CP053816
Coordinates   2890295..2892130 (-) Length   611 a.a.
NCBI ID   WP_001918120.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA7G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2885295..2897130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY17_RS12995 (HPY17_13000) - 2885303..2886358 (-) 1056 WP_000739875.1 porin -
  HPY17_RS13000 (HPY17_13005) murP 2886520..2887965 (-) 1446 WP_001074156.1 PTS N-acetylmuramic acid transporter subunit IIBC -
  HPY17_RS13005 (HPY17_13010) murQ 2887989..2888891 (-) 903 WP_175247588.1 N-acetylmuramic acid 6-phosphate etherase -
  HPY17_RS13010 (HPY17_13015) - 2889122..2889970 (+) 849 WP_000114969.1 MurR/RpiR family transcriptional regulator -
  HPY17_RS13015 (HPY17_13020) - 2889991..2890302 (-) 312 WP_175246290.1 DUF3630 family protein -
  HPY17_RS13020 (HPY17_13025) recQ 2890295..2892130 (-) 1836 WP_001918120.1 ATP-dependent DNA helicase RecQ Machinery gene
  HPY17_RS13025 (HPY17_13030) rarD 2892357..2893199 (+) 843 WP_001889839.1 EamA family transporter RarD -
  HPY17_RS13030 (HPY17_13035) ggt 2893373..2895127 (+) 1755 WP_175247589.1 gamma-glutamyltransferase -
  HPY17_RS13035 (HPY17_13040) - 2895284..2896087 (+) 804 WP_000381929.1 AraC family transcriptional regulator -
  HPY17_RS13040 (HPY17_13045) - 2896162..2896830 (+) 669 WP_175247590.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69128.42 Da        Isoelectric Point: 7.1164

>NTDB_id=395590 HPY17_RS13020 WP_001918120.1 2890295..2892130(-) (recQ) [Vibrio cholerae strain SA7G]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=395590 HPY17_RS13020 WP_001918120.1 2890295..2892130(-) (recQ) [Vibrio cholerae strain SA7G]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCAGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCGTTGGTGCTGGAAGGGGTCACCTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGCGTGAATTCCACCTTGGCGCGCGAGGAGTT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAGCGTCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACGCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGATCGCC
CGAATATTCGCTACATGCTGGTGGAAAAACACAAGCCGGTTTCGCAAGTGATCCGCTATTTGGAAACTCAGCGCGGGCAG
TGCGGCATCATTTATTGTGGTAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGAAACCACATTCGTGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATAAATAAACCCAATGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGTTGTATGACCCCGCCGA
CATGAATTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAGGCGCAAACTTGTCGCCGCCAAGTGCTGCTTAATTATTTTGGCGAATATCGCGATAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAAAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACTTACGGCATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACGCTGCAACTGACCGAAGAAGCGCGCCCGCTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(33-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.641

97.054

0.394

Multiple sequence alignment