Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GFB65_RS03730 Genome accession   NZ_CP045598
Coordinates   786804..788477 (+) Length   557 a.a.
NCBI ID   WP_010822634.1    Uniprot ID   -
Organism   Enterococcus faecalis strain TK-P4B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 781804..793477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB65_RS03700 (GFB65_03930) - 782491..782721 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  GFB65_RS03705 (GFB65_03935) - 782721..783602 (+) 882 WP_194848889.1 polyprenyl synthetase family protein -
  GFB65_RS03710 (GFB65_03940) - 783616..784431 (+) 816 WP_002364633.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  GFB65_RS13020 - 784783..785001 (+) 219 WP_228550912.1 hypothetical protein -
  GFB65_RS13025 - 784988..785341 (+) 354 WP_228550913.1 matrixin family metalloprotease -
  GFB65_RS03720 (GFB65_03950) - 785405..786205 (+) 801 WP_002388835.1 hypothetical protein -
  GFB65_RS03725 (GFB65_03955) - 786337..786786 (+) 450 WP_002358881.1 arginine repressor -
  GFB65_RS03730 (GFB65_03960) recN 786804..788477 (+) 1674 WP_010822634.1 DNA repair protein RecN Machinery gene
  GFB65_RS03735 - 788569..788679 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  GFB65_RS03740 (GFB65_03970) - 788747..789712 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  GFB65_RS03745 (GFB65_03975) - 789957..790349 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  GFB65_RS03750 (GFB65_03985) mraZ 790583..791068 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  GFB65_RS03755 (GFB65_03990) rsmH 791083..792039 (+) 957 WP_165483260.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  GFB65_RS03760 (GFB65_03995) ftsL 792056..792463 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62641.08 Da        Isoelectric Point: 4.5772

>NTDB_id=395516 GFB65_RS03730 WP_010822634.1 786804..788477(+) (recN) [Enterococcus faecalis strain TK-P4B]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGIEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=395516 GFB65_RS03730 WP_010822634.1 786804..788477(+) (recN) [Enterococcus faecalis strain TK-P4B]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCGGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCTAGGCTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAGCTTGAGCATTTACAAGAAAATGGCTTAGACGGAATAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCAGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.517

100

0.499

Multiple sequence alignment