Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VARPA_RS26070 Genome accession   NC_014931
Coordinates   5686686..5687084 (-) Length   132 a.a.
NCBI ID   WP_013543588.1    Uniprot ID   A0A0D0KYU0
Organism   Variovorax paradoxus EPS     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5681686..5692084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VARPA_RS26055 (Varpa_5224) - 5683407..5685725 (-) 2319 WP_013543585.1 methyl-accepting chemotaxis protein -
  VARPA_RS26060 (Varpa_5225) - 5685768..5686301 (-) 534 WP_013543586.1 chemotaxis protein CheW -
  VARPA_RS26065 (Varpa_5226) - 5686321..5686686 (-) 366 WP_013543587.1 response regulator -
  VARPA_RS26070 (Varpa_5227) pilG 5686686..5687084 (-) 399 WP_013543588.1 response regulator Regulator
  VARPA_RS30845 (Varpa_5228) - 5687164..5687334 (-) 171 WP_007838397.1 rubredoxin -
  VARPA_RS26075 (Varpa_5229) thiD 5687446..5688408 (+) 963 WP_013543589.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VARPA_RS26080 (Varpa_5230) hemL 5688535..5689821 (+) 1287 WP_013543590.1 glutamate-1-semialdehyde 2,1-aminomutase -
  VARPA_RS26085 (Varpa_5231) - 5689825..5690307 (+) 483 WP_013543591.1 hypothetical protein -
  VARPA_RS26090 (Varpa_5232) purH 5690430..5692037 (-) 1608 WP_013543592.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14720.95 Da        Isoelectric Point: 7.9041

>NTDB_id=39550 VARPA_RS26070 WP_013543588.1 5686686..5687084(-) (pilG) [Variovorax paradoxus EPS]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
KVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=39550 VARPA_RS26070 WP_013543588.1 5686686..5687084(-) (pilG) [Variovorax paradoxus EPS]
ATGGGCCCGAATGGATCAGGTTACAAGGTGCTGGTCATCGATGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTGGCGGAAGACGGTTTCGATGCGCTCTCCAAGGTTAACGACCACAAGCCCCATC
TGATTTTCTGCGACATCCTCATGCCGCGTCTCGATGGCTACCAGACGTGCGCCATCATCAAGCGCAACGCCCATTTCTCC
AAGGTTCCGGTCGTCATGCTGTCTTCGAAAGACGGTGTATTCGACAAGGCCCGCGGCCGCATGGTCGGGTCGCAAGACTA
CCTGACCAAACCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0KYU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

60.87

87.121

0.53

Multiple sequence alignment