Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GFB63_RS06760 Genome accession   NZ_CP045596
Coordinates   1311207..1311650 (+) Length   147 a.a.
NCBI ID   WP_100262378.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1306207..1316650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS06740 (GFB63_06925) - 1306715..1307476 (-) 762 WP_064355432.1 NUDIX domain-containing protein -
  GFB63_RS06745 (GFB63_06930) - 1307540..1308565 (-) 1026 WP_228024418.1 AAA family ATPase -
  GFB63_RS06750 (GFB63_06935) gdhA 1308997..1310349 (+) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -
  GFB63_RS06755 (GFB63_06940) - 1310606..1311016 (+) 411 WP_084828532.1 peptide deformylase -
  GFB63_RS06760 (GFB63_06945) rcrR 1311207..1311650 (+) 444 WP_100262378.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GFB63_RS06765 (GFB63_06950) rcrP 1311654..1313468 (+) 1815 WP_111679283.1 ABC transporter ATP-binding protein Regulator
  GFB63_RS06770 (GFB63_06955) rcrQ 1313458..1315236 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  GFB63_RS06775 (GFB63_06960) - 1315392..1315763 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17075.48 Da        Isoelectric Point: 9.5242

>NTDB_id=395485 GFB63_RS06760 WP_100262378.1 1311207..1311650(+) (rcrR) [Streptococcus thermophilus strain TK-P3A]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHMTDLGKKKAQDVGHFREAIYGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=395485 GFB63_RS06760 WP_100262378.1 1311207..1311650(+) (rcrR) [Streptococcus thermophilus strain TK-P3A]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATATGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCTATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

55.319

95.918

0.531

Multiple sequence alignment