Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SGGB_RS04195 Genome accession   NC_017576
Coordinates   820420..823662 (+) Length   1080 a.a.
NCBI ID   WP_012961767.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 815420..828662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS04180 (SGGB_0784) pheS 816191..817234 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  SGGB_RS04185 (SGGB_0785) - 817270..817794 (+) 525 WP_009853915.1 GNAT family N-acetyltransferase -
  SGGB_RS04190 (SGGB_0786) pheT 817865..820270 (+) 2406 WP_012961766.1 phenylalanine--tRNA ligase subunit beta -
  SGGB_RS04195 (SGGB_0787) rexB 820420..823662 (+) 3243 WP_012961767.1 ATP-dependent nuclease subunit B Machinery gene
  SGGB_RS04200 (SGGB_0788) rexA 823652..827284 (+) 3633 WP_012961768.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SGGB_RS04205 (SGGB_0789) - 827389..828534 (-) 1146 WP_012961769.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124194.64 Da        Isoelectric Point: 5.0672

>NTDB_id=39546 SGGB_RS04195 WP_012961767.1 820420..823662(+) (rexB) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MKLLYTDIQYDMTEILVGEAVAQADTGKRVFYIAPNSLSFEKERAVLELLPEEASFAITVTRFAQMARYFVLNEAQVKES
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLTELHSAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVRLLEEKCAQVIIGTYSSQKAYRAAFSTGNVYQAS
LDFLRGLAAKFHVQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLY
QGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNFKQ
EDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNL
EGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDT
ESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIEL
PLIKDNMQTKTVSADVIEARFPSDEPISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDD
SNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVESEEETFELMIANSVRIRGIID
RVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKILE
NLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELEILLAYNQNLYLKAAEQIKKGYFLINPYSEDGKSVQGDQLKAI
TRFEADRHMPYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=39546 SGGB_RS04195 WP_012961767.1 820420..823662(+) (rexB) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAGATTTTAGTTGGAGAGGCAGTAGCACAGGCAGATACTGG
TAAGCGTGTTTTTTACATTGCTCCCAACTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACCAGAAGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGCGCAGGTCAAGGAAAGC
ATTGATGACAATGGCTTGGCTATGATTTTTTACCGTGCTTTGTCACATTTTTCAGATACAGATTTGAAAGTTTTTGGGCG
TTTGAAGCAGGATACGAATTTTATCAAGCAGTTGGTTGATTTGTACAAAGAATTAAAAACGGCTAACATGACTGTGCTTG
ATTTGACAGAATTGCATTCAGCGGAGAAGCAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTGCTTGCC
AATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCTACGCTTGAAAA
TGTGAGCCTCGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTACGCTTGCTTGAAGAAAAATGTG
CGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATGTTTACCAAGCGAGT
TTAGATTTCTTGCGTGGTTTAGCAGCTAAATTCCATGTGCAACCGCAGTATGTTGAAAGTTCTCAGAAATCTCATGAGGC
TTTTTCAAAATTATCAAAATTATTCGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATGATAAAA
AACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCAAAAGCTATTCGTCATAAGCTTTAT
CAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGATAGCTATCGTTTGCAAATTGGCAAGATTTTTGA
CAAATATGACATTCCTTATTATTTCGGAAAAGCGGAGTCAATGAGTGACCACCCTTTGGTGCATTTTATTGATTCGTTGG
AGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTCGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTCAAGCAA
GAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCTAAGGAATTCACGAT
TGTTTATAAAGGAAAAAAACATTTAGCCTTTGTTAATCGCATGCGCGAACAAATCATGACGCCTTTACTTGCTTTATTTA
AGGCGCAAAAGCAACGTGGCTCTAGTTTACTTGAGAAATTAATGACATTTTTACACGCCATTCATTTGCCTGATAATCTA
GAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGTATTTTAAC
GCAATTTCAAACGATTTTTGGGCAAGAAAAGTTATCGTTGGATGACTGTTTGTCTTTGATTCGCAGCGGAATGTTAGCTG
CGCAGTACCGTGTGGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTGGAACCGCACACCAATAAA
TTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGAAGAACG
TGCCCAAATCAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGCGAAAATATCAAGAAAAATCATTTTG
CTGCCCTATCGTTGTTTAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAAGATACG
GAATCTTCTTACTTAACCGAATTAGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTCGTAATCGTTTGTCAACGGATGC
CGAGGACATTGGCAATTATAAGGCTTTATTGTCGCGCGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGCGTGAAC
TTAGCAAGGAAGAGCAAACTTTCTGGTCAGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAGGCATTGAATTG
CCGCTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGTGATGAGCCGAT
TTCGTTATCATCATCTGCAGTCACTACCTTCTACAATAATCAGTATAAATATTTCTTGCAATATGTTCTTGGCTTGCAAG
AGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCACCGTGTTTTTGAATTGGTCATGAAAGATGAT
TCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAAACAACGAATTTGGAAGACGATTTCAAATTTGTTTACGA
AGAAGATGAAGAAAGTCGTTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACGGCAACGATTTTACGTGATGATG
CTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGAATTAATGATTGCAAATAGCGTTCGTATCAGAGGAATTATTGAC
CGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTACAAATCAAGTCGCAATACTTTTGATATTCAGAAATT
CTACAATGGTTTAAGTCCGCAATTGGTGACTTATGTGCAAGCTTTGCGTGATAAAAAAGGATTGAGCGAGTCGGAGCATA
TTTTTGGTGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCAGTGGCTACAACAGAGAAAATTTTAGAA
AATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGCTATCATCT
GAATGATTCGCTTTACAGTCAAGAAGAACTTGAGATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCGGCAGAGC
AGATTAAGAAGGGGTATTTCTTGATTAATCCTTATAGTGAGGACGGCAAGTCAGTTCAAGGAGACCAATTGAAGGCAATC
ACACGATTTGAGGCTGACCGCCATATGCCTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.074

100

0.441

Multiple sequence alignment