Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GFB59_RS11210 Genome accession   NZ_CP045586
Coordinates   2408354..2409718 (-) Length   454 a.a.
NCBI ID   WP_095691933.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain TK-F8B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2403354..2414718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB59_RS11190 (GFB59_12020) - 2403997..2405013 (-) 1017 Protein_2175 DUF5808 domain-containing protein -
  GFB59_RS11195 (GFB59_12025) - 2405010..2405396 (-) 387 WP_005686116.1 GntR family transcriptional regulator -
  GFB59_RS11200 (GFB59_12030) - 2405589..2406905 (-) 1317 WP_005686114.1 MucBP domain-containing protein -
  GFB59_RS14640 (GFB59_12035) - 2407034..2407126 (+) 93 Protein_2178 Rgg/GadR/MutR family transcriptional regulator -
  GFB59_RS11205 (GFB59_12040) - 2407218..2408333 (-) 1116 WP_005686113.1 PIN/TRAM domain-containing protein -
  GFB59_RS11210 (GFB59_12045) radA 2408354..2409718 (-) 1365 WP_095691933.1 DNA repair protein RadA Machinery gene
  GFB59_RS11215 (GFB59_12050) - 2409738..2410277 (-) 540 WP_005686110.1 dUTP diphosphatase -
  GFB59_RS11220 (GFB59_12060) - 2410947..2411237 (+) 291 WP_005686109.1 GNAT family N-acetyltransferase -
  GFB59_RS11225 (GFB59_12070) - 2411532..2412851 (+) 1320 WP_005686107.1 aminopeptidase C -
  GFB59_RS11230 (GFB59_12075) - 2412996..2414342 (+) 1347 WP_005686106.1 C1 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49171.60 Da        Isoelectric Point: 8.3128

>NTDB_id=395381 GFB59_RS11210 WP_095691933.1 2408354..2409718(-) (radA) [Lacticaseibacillus rhamnosus strain TK-F8B]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRTGSKVKPTRMDEVTVTKETRVKTGLAELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLASTGGTVLYVSGEESASQIKMRAGRLGIANSGMYLYPETDMPSIENVI
DQMQPDYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEV
RRVNRIEDRVKEAAKLGFKRIFVPRNNLQGWRAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=395381 GFB59_RS11210 WP_095691933.1 2408354..2409718(-) (radA) [Lacticaseibacillus rhamnosus strain TK-F8B]
ATGGCGAAAGCAAAAACACAATATGTATGTCAAAATTGCGGTTATATTTCGGCGACTTATTTAGGCCGTTGTCCAAACTG
CGGCGGGTGGAATACGCTCGTCGAAGAAACCGTTAGTTCCACTAAATCGGCGCCGCGACAAACGCGCACCGGCAGCAAGG
TTAAGCCCACACGCATGGACGAGGTCACGGTGACCAAAGAAACCCGGGTTAAAACAGGCTTGGCCGAGTTGAATCGCGTG
CTTGGTGGCGGTGTGGTTCCGGGCTCGTTGGTTCTGATTGGCGGTGATCCCGGGATTGGCAAATCAACCTTGCTGCTGCA
GGTGTCTGGTCAGCTAGCTAGCACAGGTGGTACGGTGTTGTACGTTTCAGGTGAAGAAAGCGCCAGTCAGATTAAAATGC
GGGCAGGGCGGCTAGGTATTGCCAACTCCGGCATGTATTTATATCCCGAAACCGACATGCCCAGCATCGAAAATGTGATT
GACCAGATGCAACCGGATTATGTGGTGATTGACTCGGTTCAAACCATGAATGTACCGGACATGAATTCGGCAGTCGGCTC
GGTTGCCCAGATTCGGGAAGTCACCGCCGAATTGATGCGAATTGCCAAGTCAAAAGGTGTGACGATTTTTATCGTTGGTC
ACGTGACGAAGGAAGGCGCTATTGCCGGGCCCAAGATTCTTGAGCATATGGTGGACACCGTGCTTTATTTTGAGGGCGAT
ATGCATCATACCTATCGCATCTTAAGGTCGGTCAAGAATCGGTTCGGCTCTACTAACGAAATCGGTATTTTCGAAATGCA
TCAAAATGGCTTACAGGAAGTTGCCAATCCCTCGGAAATCTTCCTGGAAGAACGGCTGGCCGGTGCAACCGGCTCGGCGG
TGGTGGTTTCGATGGAAGGTACCCGTCCGATTCTGGTTGAAATCCAGGCCCTCATCAGCCCGACCATGTATGGCAATGCC
AAACGCACGAGCAGCGGCTTGGATCACAACCGCGTGAGCTTGATCATGGCGGTGCTGGAAAAACGTGCCAATTTGATGTT
GCAAAATCAGGACGCTTACTTGAAAGCAACAGGGGGCGTTAAGCTGGATGAGCCGGCGATTGACTTGGCAATGGCAGTGG
CAATTGCCTCGTCATACCGCGACAAGGAAATCCCGCCGACTGATTGTTTTGTCGGTGAAATTGGCTTAACCGGTGAAGTG
CGGCGGGTGAATCGCATTGAAGACCGGGTGAAAGAGGCGGCTAAGTTAGGGTTTAAACGAATTTTTGTGCCGCGAAATAA
CCTGCAAGGCTGGCGTGCGCCTAAAGATATTCAGGTTATTGGCGTCACAAGCATTGCCGAAGCGTTGCATAAGGTTTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.433

99.78

0.683
  radA Streptococcus pneumoniae Rx1

68.433

99.78

0.683
  radA Streptococcus pneumoniae D39

68.433

99.78

0.683
  radA Streptococcus pneumoniae R6

68.433

99.78

0.683
  radA Streptococcus pneumoniae TIGR4

68.433

99.78

0.683
  radA Streptococcus mitis SK321

68.212

99.78

0.681
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.654

Multiple sequence alignment