Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GFH33_RS13795 Genome accession   NZ_CP045585
Coordinates   2605118..2605396 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain x023     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2605505..2606850 2605118..2605396 flank 109


Gene organization within MGE regions


Location: 2605118..2606850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFH33_RS13795 (GFH33_13795) abrB 2605118..2605396 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GFH33_RS13800 (GFH33_13800) - 2605505..2606850 (+) 1346 WP_087942842.1 IS3-like element ISBth10 family transposase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=395330 GFH33_RS13795 WP_000842216.1 2605118..2605396(+) (abrB) [Bacillus thuringiensis strain x023]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=395330 GFH33_RS13795 WP_000842216.1 2605118..2605396(+) (abrB) [Bacillus thuringiensis strain x023]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment