Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GE559_RS09455 | Genome accession | NZ_CP045573 |
| Coordinates | 2034037..2035221 (+) | Length | 394 a.a. |
| NCBI ID | WP_096750174.1 | Uniprot ID | A0A560VQ00 |
| Organism | Burkholderia gladioli strain KACC 18962 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2029037..2040221
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE559_RS09425 (GE559_09350) | - | 2029656..2030270 (+) | 615 | WP_013699419.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| GE559_RS09430 (GE559_09355) | pth | 2030367..2030972 (+) | 606 | WP_096750176.1 | aminoacyl-tRNA hydrolase | - |
| GE559_RS09435 (GE559_09360) | hisC | 2031068..2032135 (+) | 1068 | WP_096750715.1 | histidinol-phosphate transaminase | - |
| GE559_RS09440 (GE559_09365) | - | 2032282..2032554 (-) | 273 | WP_096750714.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| GE559_RS09445 (GE559_09370) | coaD | 2032621..2033121 (-) | 501 | WP_013699423.1 | pantetheine-phosphate adenylyltransferase | - |
| GE559_RS09450 (GE559_09375) | rsmD | 2033233..2033847 (-) | 615 | WP_096750175.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| GE559_RS09455 (GE559_09380) | pilA | 2034037..2035221 (+) | 1185 | WP_096750174.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| GE559_RS09460 (GE559_09385) | maiA | 2035294..2035938 (-) | 645 | WP_186021433.1 | maleylacetoacetate isomerase | - |
| GE559_RS09465 (GE559_09390) | ybiB | 2036152..2037132 (+) | 981 | WP_338509628.1 | DNA-binding protein YbiB | - |
| GE559_RS09470 (GE559_09395) | leuA | 2037632..2039284 (+) | 1653 | WP_096750171.1 | 2-isopropylmalate synthase | - |
| GE559_RS09475 (GE559_09400) | - | 2039467..2039853 (-) | 387 | WP_013699429.1 | nuclear transport factor 2 family protein | - |
Sequence
Protein
Download Length: 394 a.a. Molecular weight: 41402.44 Da Isoelectric Point: 4.7491
>NTDB_id=395288 GE559_RS09455 WP_096750174.1 2034037..2035221(+) (pilA) [Burkholderia gladioli strain KACC 18962]
MFSFFKRLIGSKADGAPTDDPDAPTDRQDDAEAPAAEAARPVERVAAPAPAPAVPVEPAAPAQVAPALPAATADEDEAQA
VTAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAE
RLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQ
LAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVID
ANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
MFSFFKRLIGSKADGAPTDDPDAPTDRQDDAEAPAAEAARPVERVAAPAPAPAVPVEPAAPAQVAPALPAATADEDEAQA
VTAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAE
RLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQ
LAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVID
ANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
Nucleotide
Download Length: 1185 bp
>NTDB_id=395288 GE559_RS09455 WP_096750174.1 2034037..2035221(+) (pilA) [Burkholderia gladioli strain KACC 18962]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCCGGACGCGCCGACGGACCG
GCAGGACGACGCCGAGGCCCCCGCGGCCGAAGCGGCCCGGCCCGTCGAGCGGGTCGCCGCGCCTGCCCCGGCCCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCGCCGCCACCGCGGACGAAGACGAAGCGCAGGCC
GTCACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCGCGCCTGCGCTCGGG
CCTGTCGAAGACCAGTTCCAGCCTGACGAGCGTCTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAGGAGCTCGAGA
CCGCGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAG
CGGCTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCACT
GATGCTGGGTCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGC
TGGCCAAGCATCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGGGACACCTTCCGCGCCGCCGCGCGCGAGCAG
CTCGCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGC
GGTGGGCGCGGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGA
TGGAGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGAC
GCCAACACCGGTCAGAACGCGCTCGCCCAGGTAAAGGCCTTCGACGACGCGCTGGGCCTCACCGGCCTGATCGTCACCAA
GCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTACCGGTCTACTTCATCGGCGTCG
GCGAGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCCGGACGCGCCGACGGACCG
GCAGGACGACGCCGAGGCCCCCGCGGCCGAAGCGGCCCGGCCCGTCGAGCGGGTCGCCGCGCCTGCCCCGGCCCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCGCCGCCACCGCGGACGAAGACGAAGCGCAGGCC
GTCACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCGCGCCTGCGCTCGGG
CCTGTCGAAGACCAGTTCCAGCCTGACGAGCGTCTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAGGAGCTCGAGA
CCGCGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAG
CGGCTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCACT
GATGCTGGGTCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGC
TGGCCAAGCATCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGGGACACCTTCCGCGCCGCCGCGCGCGAGCAG
CTCGCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGC
GGTGGGCGCGGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGA
TGGAGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGAC
GCCAACACCGGTCAGAACGCGCTCGCCCAGGTAAAGGCCTTCGACGACGCGCTGGGCCTCACCGGCCTGATCGTCACCAA
GCTCGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTACCGGTCTACTTCATCGGCGTCG
GCGAGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.576 |
76.65 |
0.487 |