Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LS451_RS05280 Genome accession   NZ_CP045563
Coordinates   1019740..1021539 (-) Length   599 a.a.
NCBI ID   WP_056957557.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain LS451     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014740..1026539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS451_RS05250 (LS451_05245) trmL 1015341..1015865 (-) 525 WP_056957553.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  LS451_RS05255 (LS451_05250) - 1015996..1016577 (+) 582 WP_049777614.1 copper homeostasis protein CutC -
  LS451_RS05260 (LS451_05255) - 1016608..1017495 (-) 888 WP_056957554.1 RluA family pseudouridine synthase -
  LS451_RS05265 (LS451_05260) - 1017488..1018297 (-) 810 WP_041817890.1 NAD kinase -
  LS451_RS05270 (LS451_05265) - 1018272..1018919 (-) 648 WP_056957555.1 GTP pyrophosphokinase family protein -
  LS451_RS05275 (LS451_05270) - 1019083..1019652 (+) 570 WP_056957556.1 DsbA family protein -
  LS451_RS05280 (LS451_05275) pepF 1019740..1021539 (-) 1800 WP_056957557.1 oligoendopeptidase F Regulator
  LS451_RS05285 (LS451_05280) - 1021529..1022596 (-) 1068 WP_056957558.1 competence protein CoiA -
  LS451_RS05290 (LS451_05285) - 1022645..1023340 (-) 696 WP_056957559.1 adaptor protein MecA -
  LS451_RS05295 (LS451_05290) - 1023352..1024095 (-) 744 WP_056957560.1 MBL fold metallo-hydrolase -
  LS451_RS05300 (LS451_05295) - 1024183..1024683 (+) 501 WP_056957561.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68614.00 Da        Isoelectric Point: 4.9465

>NTDB_id=395193 LS451_RS05280 WP_056957557.1 1019740..1021539(-) (pepF) [Fructilactobacillus sanfranciscensis strain LS451]
MTVKSIPNRDQVSENLTWDLTPIFSDNQAFLAELDSVKEATKTINQLSGIMSNSADDLLNVVKKVLNLNRRYENVYVYSH
LSNDVDTSNNDAQARMEQVEALGTKLSEATAWFDPEIINLGKTKIDNFISKQPKLSEYDRLFKMILKDEGHVLSVEAEKL
LSGASNIFNAPEKIFSMMDSADFVFPEVKDDQGNLVRLSNGLYSLLLQSTNQNTRKEAFQKFYTVFNQFKHTLAATLSSE
VAVNNYQAQAHHFNSAREQAMHENEIPESVFDTLVKTVNDNLPLLHRYVSLRKKILNLSEMHMYDMYVPLAKDPDVKYTF
AESKKIMLQALQIMGPDYVKHVQEELDNRWIDVVENKGKRTGAYSSGVYDTNPYILLNWQDNLDNLYTLIHETGHSMHSF
YSSHNQPYQYGNYSIFVAEIASTTNENILTDYLLANTNDSEMKKYILSQYLEGFKGTIFRQTQFAEFENWIHEQGRLGKS
LTADVMSKKYKEINEKYYGDEIVSDPEIAIEWSRIPHFYYDFYVYQYATGFGAASTLAEKISSGNQNSIDAYLNYLKSGS
SDTPINIMKRAGVDMTNSQYLEAAFAKFSQRIDELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=395193 LS451_RS05280 WP_056957557.1 1019740..1021539(-) (pepF) [Fructilactobacillus sanfranciscensis strain LS451]
ATGACAGTTAAAAGTATCCCCAATCGTGATCAGGTTTCTGAAAACTTAACCTGGGATTTAACCCCTATTTTTTCAGATAA
TCAAGCATTCCTTGCTGAGTTAGATTCTGTTAAAGAAGCGACTAAAACAATTAATCAATTATCTGGTATTATGAGCAATA
GTGCAGATGATTTATTAAATGTAGTTAAAAAAGTTTTGAATTTAAATCGTCGTTACGAAAACGTATATGTATATTCACAT
CTTAGCAATGACGTGGATACTTCCAATAACGATGCTCAGGCTAGAATGGAACAAGTTGAAGCCCTAGGAACAAAATTAAG
TGAAGCAACAGCTTGGTTTGATCCGGAAATTATTAATCTTGGCAAAACCAAAATAGATAATTTCATTTCCAAGCAACCTA
AATTAAGCGAATATGATCGTCTATTTAAGATGATTTTGAAAGATGAAGGTCATGTTCTAAGTGTTGAAGCTGAAAAATTA
TTGTCAGGTGCTTCTAATATTTTTAACGCGCCTGAAAAAATATTCAGTATGATGGATAGTGCTGATTTTGTTTTTCCAGA
AGTAAAAGATGATCAAGGAAACTTAGTACGCTTATCAAACGGATTATATAGTCTCTTACTTCAATCAACCAACCAAAATA
CCAGAAAAGAAGCCTTTCAAAAGTTCTATACAGTGTTTAATCAGTTTAAGCATACTTTAGCAGCAACTTTATCATCTGAA
GTTGCAGTAAATAATTATCAAGCCCAAGCACATCACTTTAATAGTGCACGGGAACAAGCTATGCATGAAAATGAAATTCC
AGAAAGCGTTTTTGATACTTTAGTTAAAACGGTAAATGACAATTTACCTTTATTGCATCGATATGTATCTTTGCGTAAAA
AGATTCTAAATTTATCTGAAATGCATATGTATGATATGTATGTGCCTCTCGCAAAAGACCCAGATGTTAAATATACGTTT
GCTGAATCAAAAAAGATTATGTTACAAGCACTTCAAATTATGGGACCAGACTATGTAAAACATGTTCAAGAAGAACTAGA
CAATCGCTGGATTGATGTAGTTGAAAATAAAGGCAAACGGACTGGTGCATATTCATCTGGAGTTTATGATACCAATCCAT
ACATTTTGTTGAACTGGCAAGATAATCTTGATAATTTATATACTTTAATTCATGAAACTGGACATAGTATGCACAGTTTT
TATTCTAGTCATAATCAACCATATCAATATGGAAATTATTCAATTTTTGTTGCTGAAATTGCCTCGACAACTAACGAAAA
TATTCTTACCGACTATTTATTAGCTAACACGAATGATTCAGAAATGAAGAAATACATTCTTAGTCAATATTTAGAAGGTT
TCAAGGGAACTATTTTTCGTCAAACACAATTTGCTGAATTTGAGAATTGGATTCACGAACAGGGAAGATTAGGAAAATCA
TTAACTGCGGATGTAATGAGTAAAAAGTACAAAGAAATTAATGAAAAATATTATGGTGATGAGATTGTTTCGGATCCAGA
AATTGCAATTGAATGGTCAAGAATTCCACATTTCTATTATGATTTTTATGTATATCAGTACGCAACTGGGTTTGGTGCAG
CTTCAACTTTAGCTGAAAAAATCAGTTCTGGTAATCAGAATTCAATTGATGCTTACTTAAATTATTTAAAATCTGGGAGT
TCAGATACACCAATTAATATTATGAAGCGTGCAGGGGTAGATATGACTAATAGTCAATATTTAGAAGCTGCATTTGCCAA
ATTCTCACAACGCATAGATGAATTAGAAAGCTTAATTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-586)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.831

0.494

Multiple sequence alignment