Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LS451_RS02210 Genome accession   NZ_CP045563
Coordinates   428424..429806 (+) Length   460 a.a.
NCBI ID   WP_056958130.1    Uniprot ID   -
Organism   Fructilactobacillus sanfranciscensis strain LS451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 423424..434806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS451_RS02185 (LS451_02175) - 423722..424393 (+) 672 WP_056958139.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  LS451_RS02190 (LS451_02180) - 424491..425543 (+) 1053 WP_056958137.1 WxL protein host-binding domain-containing protein -
  LS451_RS02195 (LS451_02185) - 425652..426986 (-) 1335 WP_056958135.1 C1 family peptidase -
  LS451_RS02200 (LS451_02190) rpiA 427041..427727 (-) 687 WP_056958134.1 ribose-5-phosphate isomerase RpiA -
  LS451_RS02205 (LS451_02195) - 427875..428411 (+) 537 WP_056958132.1 dUTP diphosphatase -
  LS451_RS02210 (LS451_02200) radA 428424..429806 (+) 1383 WP_056958130.1 DNA repair protein RadA Machinery gene
  LS451_RS02215 (LS451_02205) gltX 429880..431370 (+) 1491 WP_056958128.1 glutamate--tRNA ligase -
  LS451_RS02220 (LS451_02210) cysS 431477..432895 (+) 1419 WP_056958126.1 cysteine--tRNA ligase -
  LS451_RS02225 (LS451_02215) - 432895..433320 (+) 426 WP_056958124.1 Mini-ribonuclease 3 -
  LS451_RS02230 (LS451_02220) rlmB 433310..434061 (+) 752 Protein_427 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LS451_RS02235 (LS451_02225) - 434064..434603 (+) 540 WP_056958123.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49975.21 Da        Isoelectric Point: 6.4237

>NTDB_id=395181 LS451_RS02210 WP_056958130.1 428424..429806(+) (radA) [Fructilactobacillus sanfranciscensis strain LS451]
MAKASTRFVCSNCGYVSPTYLGRCPNCGEWNTFEEETVTKNDTKTANVTRGSFEGNKSRPTLIDDVDAHDAPRYKIESNE
LNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSHYGKRVLYVTGEESADQVKMRSDRLGVKHLDNLYVFPETDMTA
IREAIANVKPDVVIIDSVQTMQEGDVASAVGSVSQVRGVTADLMNIAKTNNITIFVVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHAYRLLRAVKNRFGSTNELGIFEMVDTGLKEVANPSEIFLEERLHNATGSAIVVAMEGTRPILVEIQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLVEPAIDLAMAISIASSYEDISTDPKECYIGELG
LTGEIRRVDRIEQRIREATKLGFSRVIVPKHNLDGLKMDFDIDVVGVTTIREALKVALKK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=395181 LS451_RS02210 WP_056958130.1 428424..429806(+) (radA) [Fructilactobacillus sanfranciscensis strain LS451]
ATGGCAAAGGCATCGACACGATTTGTTTGTTCTAATTGTGGTTATGTTTCACCCACTTATTTGGGACGTTGTCCTAACTG
TGGTGAGTGGAATACGTTTGAAGAAGAAACGGTTACCAAAAACGATACGAAAACAGCCAATGTAACCAGAGGTTCATTTG
AAGGGAACAAATCAAGACCAACTTTAATTGATGATGTTGACGCTCACGATGCACCCCGTTATAAAATCGAATCGAACGAA
TTAAATCGTGTATTGGGTGGTGGAGTAGTTCCAGGGTCTTTAGTTTTAATTGGTGGTGACCCAGGAATTGGAAAGTCAAC
GTTGTTATTACAAGTTTCTGGACAATTAAGTCATTATGGTAAACGAGTTTTGTACGTTACTGGAGAAGAAAGTGCGGATC
AAGTTAAGATGCGTTCGGATCGACTTGGTGTTAAGCATCTTGATAATTTATATGTTTTCCCAGAAACTGATATGACGGCT
ATTCGGGAAGCAATTGCAAATGTTAAACCAGATGTTGTCATTATTGATTCAGTGCAAACGATGCAAGAAGGCGACGTGGC
ATCAGCAGTTGGTTCTGTTTCACAAGTCCGTGGCGTGACGGCTGATTTAATGAACATTGCGAAGACTAACAATATTACCA
TTTTTGTCGTGGGACATGTGACTAAAGGTGGAGCGATTGCTGGACCAAAGACTTTAGAGCATATGGTTGATACCGTTTTG
TATTTTGAAGGTGACAAGCATCATGCTTATCGTTTGTTGCGAGCCGTTAAAAATCGATTTGGTTCAACTAATGAATTAGG
AATTTTTGAAATGGTTGATACAGGACTAAAAGAAGTTGCTAATCCATCTGAAATCTTTTTAGAAGAACGGTTGCATAACG
CTACCGGTTCCGCGATTGTAGTTGCGATGGAAGGGACTCGTCCCATTTTAGTTGAAATCCAAGCTTTAATCACGCCCTCA
GTCTTTGGGAATGCCCAACGAACTGCGACAGGAGTTGACCGAAATCGGGTTTCTTTGATTATGGCCGTTTTGGAAAAACG
AGCAGGCTTGATGTTACAAAACCAGGATGCATATTTAAAAGCTGCTGGAGGCGTTAAGCTAGTTGAACCTGCAATTGATT
TAGCAATGGCAATCAGTATTGCTTCTAGTTATGAAGACATTAGTACTGATCCAAAAGAATGTTATATTGGTGAATTAGGT
TTGACTGGTGAAATTCGTCGGGTTGATCGAATTGAGCAACGAATTCGTGAAGCTACTAAATTAGGTTTTTCCCGTGTGAT
TGTGCCCAAACATAATTTAGATGGATTAAAAATGGATTTTGATATTGATGTGGTTGGAGTTACTACCATCCGCGAAGCTT
TGAAAGTTGCTTTAAAGAAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.912

99.13

0.643
  radA Streptococcus pneumoniae D39

64.912

99.13

0.643
  radA Streptococcus pneumoniae R6

64.912

99.13

0.643
  radA Streptococcus pneumoniae TIGR4

64.912

99.13

0.643
  radA Streptococcus mitis SK321

64.912

99.13

0.643
  radA Streptococcus mitis NCTC 12261

64.912

99.13

0.643
  radA Bacillus subtilis subsp. subtilis str. 168

61.135

99.565

0.609

Multiple sequence alignment