Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LF543_RS04385 Genome accession   NZ_CP045562
Coordinates   854381..856183 (-) Length   600 a.a.
NCBI ID   WP_010021172.1    Uniprot ID   -
Organism   Fructilactobacillus fructivorans strain LF543     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 849381..861183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF543_RS04360 (LF543_04315) - 850365..851246 (-) 882 WP_010021181.1 RluA family pseudouridine synthase -
  LF543_RS04365 (LF543_04320) - 851239..852051 (-) 813 WP_010021180.1 NAD kinase -
  LF543_RS04370 (LF543_04325) - 852063..852683 (-) 621 WP_010021179.1 GTP pyrophosphokinase family protein -
  LF543_RS04375 (LF543_04330) - 852860..853444 (+) 585 WP_010021178.1 DsbA family protein -
  LF543_RS04380 (LF543_04335) - 853494..854303 (-) 810 WP_010021175.1 aldo/keto reductase -
  LF543_RS04385 (LF543_04340) pepF 854381..856183 (-) 1803 WP_010021172.1 oligoendopeptidase F Regulator
  LF543_RS04390 (LF543_04345) - 856199..857260 (-) 1062 WP_158529758.1 competence protein CoiA -
  LF543_RS04395 (LF543_04350) - 857317..858021 (-) 705 WP_010021170.1 adaptor protein MecA -
  LF543_RS04400 (LF543_04355) - 858044..858784 (-) 741 WP_010021168.1 MBL fold metallo-hydrolase -
  LF543_RS04405 (LF543_04360) - 858888..859388 (+) 501 WP_010021166.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69106.50 Da        Isoelectric Point: 5.1735

>NTDB_id=395169 LF543_RS04385 WP_010021172.1 854381..856183(-) (pepF) [Fructilactobacillus fructivorans strain LF543]
MSEIQNLPKRNEVPRELTWDLTTIYKNHSEFEKSYDEVKKQVHDVSRLKGRLGQNAEQLLSVITKVLNLNRKYEKLYVYA
QSASDVDTTNNDLQSDMDRVEKLGSDVGQAQSWLEPEIIALGSDKIRQFTQDNPALKEYGRFFDEILVNKDHVLPEDQEK
LLAGAATIFESPEKTFGILDSSDLKFPEVDDGSGKKVRLSNGIYSLLLESQNPTVRKNTFKAFYSTFDQFQNTLASTLSS
EVAVHNFEAQTRKYNSAREMAMSENEIPEVVYRTLIQSVHEHLPLLHRYVALRKKILNVPELHMYDMYVPLSGKPSLKYT
FDQAKEEALKALSVYGPDYLQHVKEEFNNRWIDVVENKGKRTGAYSSGMYDTNPFVLLNWQDNLDNLYTLVHETGHSMHS
YYSSHNQPYQYGDYSIFVAEIASTTNENILTDYLLKNNSDPEVIKYILNSYLDGVKGTIFRQTQFAEFEEFIHASEQSGK
SLTADFMNKYYLKLNQKYYGDDVVSDPEIRLEWSRIPHFYYDFYVYQYATGFAAASALADRITSGDPEKVAAYLNYLKSG
SSKDPISIMKAAGVDMTKPDYLNQAFDKFERRLNELEKML

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=395169 LF543_RS04385 WP_010021172.1 854381..856183(-) (pepF) [Fructilactobacillus fructivorans strain LF543]
ATGTCAGAGATACAAAATTTACCCAAGCGAAACGAAGTCCCACGGGAATTAACTTGGGATTTAACCACGATTTATAAAAA
TCATTCAGAGTTCGAAAAGTCTTATGATGAAGTCAAAAAACAGGTCCATGATGTTAGTCGCCTAAAGGGTCGATTAGGAC
AGAATGCTGAACAACTATTGAGTGTAATTACGAAGGTTCTAAATTTAAATCGAAAATATGAAAAATTATACGTTTATGCT
CAATCGGCAAGTGATGTTGACACAACTAATAATGATTTACAAAGTGACATGGATCGAGTGGAGAAGTTAGGAAGTGACGT
TGGTCAGGCTCAGTCGTGGTTGGAGCCAGAGATCATTGCACTTGGGTCTGATAAAATTCGGCAGTTTACCCAAGATAATC
CAGCACTAAAAGAATATGGGCGCTTTTTTGATGAAATTTTGGTAAATAAAGATCACGTCTTACCTGAAGATCAAGAAAAG
TTGCTTGCAGGAGCAGCGACCATTTTTGAATCTCCTGAAAAGACCTTTGGGATTTTAGACAGTTCCGATCTTAAATTTCC
AGAAGTTGATGATGGGTCTGGCAAAAAAGTGCGTCTTTCAAATGGTATTTATAGTTTACTTTTAGAATCACAAAATCCTA
CAGTGCGAAAAAATACTTTTAAAGCCTTTTACTCAACTTTTGATCAATTTCAAAACACACTCGCTTCAACACTATCTTCG
GAGGTTGCCGTTCATAATTTTGAAGCCCAAACTCGGAAGTACAATTCTGCTAGAGAAATGGCAATGAGTGAGAATGAAAT
CCCTGAAGTGGTTTATCGGACTTTAATTCAAAGTGTTCACGAACATTTACCGTTGTTGCATCGTTATGTAGCTCTTCGTA
AGAAGATTCTAAATGTTCCTGAACTTCATATGTATGATATGTATGTTCCGTTGAGTGGGAAACCAAGTCTTAAGTACACT
TTTGATCAAGCCAAAGAAGAAGCGCTAAAAGCTTTAAGTGTTTACGGTCCCGATTATCTTCAGCACGTTAAAGAAGAATT
TAATAATCGTTGGATCGATGTAGTGGAAAACAAGGGCAAACGGACTGGGGCCTATTCTTCAGGGATGTATGATACTAATC
CCTTTGTTTTACTTAACTGGCAGGATAATCTTGATAATCTCTATACGTTAGTTCATGAGACTGGTCATAGTATGCATAGC
TATTATTCTTCCCATAATCAACCATATCAATACGGAGATTATTCAATTTTTGTGGCCGAAATTGCTTCCACAACCAATGA
AAATATTTTGACAGATTATTTACTTAAGAATAATTCTGATCCAGAAGTTATCAAGTATATTCTTAATTCCTATCTGGATG
GGGTGAAGGGAACCATTTTCCGTCAAACCCAATTTGCTGAGTTTGAAGAGTTCATTCACGCTTCTGAACAATCTGGGAAA
TCGCTAACGGCTGATTTTATGAATAAATATTATCTAAAACTGAATCAAAAATATTATGGTGATGACGTGGTTTCTGATCC
TGAAATTCGACTCGAATGGTCTCGAATTCCTCATTTTTACTATGATTTCTACGTTTACCAGTATGCAACAGGATTTGCCG
CTGCTTCGGCTTTGGCGGATCGTATTACCAGCGGTGATCCTGAAAAAGTTGCAGCATATCTGAATTATTTGAAATCGGGA
AGTAGTAAAGATCCCATTTCAATAATGAAAGCAGCTGGGGTTGATATGACAAAACCAGATTATTTAAATCAAGCCTTCGA
TAAGTTTGAGCGACGATTAAATGAATTAGAAAAAATGTTATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.592

98.5

0.498

Multiple sequence alignment