Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GD578_RS16660 Genome accession   NZ_CP045560
Coordinates   3457758..3458642 (-) Length   294 a.a.
NCBI ID   WP_025467872.1    Uniprot ID   A0AB37CZJ7
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3452758..3463642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS16645 (GD578_16860) miaB 3454605..3456056 (+) 1452 WP_002050781.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GD578_RS16650 (GD578_16865) - 3456094..3457182 (+) 1089 WP_002050786.1 PhoH family protein -
  GD578_RS16655 (GD578_16870) ybeY 3457192..3457668 (+) 477 WP_002050749.1 rRNA maturation RNase YbeY -
  GD578_RS16660 (GD578_16875) tonB2 3457758..3458642 (-) 885 WP_025467872.1 energy transducer TonB Machinery gene
  GD578_RS16665 (GD578_16880) - 3458876..3459547 (+) 672 WP_002050771.1 hypothetical protein -
  GD578_RS16670 (GD578_16885) - 3459705..3460418 (+) 714 WP_002050776.1 DUF3108 domain-containing protein -
  GD578_RS16675 (GD578_16890) - 3460490..3461065 (+) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  GD578_RS16680 (GD578_16895) wrbA 3461120..3461722 (-) 603 WP_185126866.1 NAD(P)H:quinone oxidoreductase -
  GD578_RS16685 (GD578_16900) - 3462003..3463250 (+) 1248 WP_002050751.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33700.64 Da        Isoelectric Point: 9.4514

>NTDB_id=395146 GD578_RS16660 WP_025467872.1 3457758..3458642(-) (tonB2) [Acinetobacter nosocomialis strain AC1530]
MLKKRSLFIEPFHYWWQDRVFIVAIILAILLHTFILLIHFAMPAPLEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDASTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=395146 GD578_RS16660 WP_025467872.1 3457758..3458642(-) (tonB2) [Acinetobacter nosocomialis strain AC1530]
ATGTTGAAAAAAAGAAGTCTTTTTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGTTGCGATAATACT
CGCAATCTTATTGCATACTTTTATACTGCTCATCCATTTTGCGATGCCTGCACCATTAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATGCTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAGGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCCTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTAATTTTAAATGCTCAAGGGGGAATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCACCGTTTGGTCGTTTTGA
TGCAAATATGAAGGATATTTCCGAGCTACGTATTGTGCGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.558

100

0.946

Multiple sequence alignment