Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GD578_RS01800 Genome accession   NZ_CP045560
Coordinates   386905..389133 (-) Length   742 a.a.
NCBI ID   WP_002156988.1    Uniprot ID   A0AB37CRA6
Organism   Acinetobacter nosocomialis strain AC1530     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381905..394133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS01780 (GD578_01795) - 382090..383049 (-) 960 WP_002156996.1 DnaJ C-terminal domain-containing protein -
  GD578_RS01785 (GD578_01800) - 383199..383810 (-) 612 WP_002157001.1 LysE family translocator -
  GD578_RS01790 (GD578_01805) - 383947..384822 (-) 876 WP_002157035.1 Hsp33 family molecular chaperone HslO -
  GD578_RS01795 (GD578_01810) - 384988..386829 (-) 1842 WP_002156997.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GD578_RS01800 (GD578_01815) priA 386905..389133 (-) 2229 WP_002156988.1 primosomal protein N' Machinery gene
  GD578_RS01805 (GD578_01820) gspF 389282..390487 (+) 1206 WP_002157042.1 type II secretion system inner membrane protein GspF -
  GD578_RS01810 (GD578_01825) gspG 390511..391092 (+) 582 WP_002157033.1 type II secretion system major pseudopilin GspG -
  GD578_RS01815 (GD578_01830) - 391359..391703 (+) 345 WP_153518208.1 hypothetical protein -
  GD578_RS01820 (GD578_01835) - 391767..392027 (-) 261 WP_002156931.1 DUF2798 domain-containing protein -
  GD578_RS01825 (GD578_01840) - 392268..392606 (+) 339 WP_002156976.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84026.92 Da        Isoelectric Point: 8.5625

>NTDB_id=395127 GD578_RS01800 WP_002156988.1 386905..389133(-) (priA) [Acinetobacter nosocomialis strain AC1530]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGTFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPT
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINVQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=395127 GD578_RS01800 WP_002156988.1 386905..389133(-) (priA) [Acinetobacter nosocomialis strain AC1530]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCCCGCGTCGCAATTTCATTTGGACGGCAGAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCACCTTTCAACTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCTGCCCAATATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTAGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCATATCAAATTTTAAAATTGCACCCTACA
GGTACAACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGTCTGATAGA
CTGTACACTTGAGCCCCATGACTTTAGTCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACGTTAAATGATGATCAAA
AGAAGGCAACTCAGCACGTCATTAATGTGCAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACCGAAGTTTATTTGCACATCATGCATGAGGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTGCCTGAAATTGGTTT
AACCCCTCAAACTATTTCTCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCAGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAGACTGGAAAGGCCTCTATTATTTTAGGGACTCGTTCCGCTATTTATACGCCA
CTGCCACGTTTGGGCCTCATCATTTTAGATGAAGAACACGACCTGTCTTATAAGCAGCAAGAAGGTTTCCGTTATCATGC
TCGTGATGTCGCGCTTTATCGGGGCCACTTACAAGGCTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGTATCGACAGTT
ATTACTTAGTAGAAACTGGCAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCGCCTGTATTGGTGTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGCACGGTT
CATCGCTTGCCCGATCATTGCCCTGAATGTCAGCAAAAAAGCTTAAAAACTTTAGGTGCAGGAACCGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGATCATGATGTGATTCGAGTCGATCGTGACAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTCGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCGGGTTTACTCAGTGTCGATATTCGGGCGCCAGAACGTACGGCGCA
GCTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTTACCACACTCATCGAAAAGGATTATCGGGCAGTCGCAAAACAAACATTAGCTGAACGGAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCGGTCTTAATTCGTGCTGAATCGAAAGATCGTGACTATACTTTGCATTTTTTAAATGAAGC
TGCCGAACAACTTCGTCAAATTGCAGGTGATATTGTTGATATCTGGGGGCCGATTCCAGCACCAATGGAGCGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCAGACTCTCTATTGATGTTGACCCACAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-369)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.17

100

0.972

Multiple sequence alignment