Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   HPY16_RS12410 Genome accession   NZ_CP053802
Coordinates   2753918..2755753 (-) Length   611 a.a.
NCBI ID   WP_069216210.1    Uniprot ID   A0ABX9FEN8
Organism   Vibrio cholerae strain L6G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2748918..2760753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS12385 (HPY16_12380) - 2748926..2749981 (-) 1056 WP_002156734.1 porin -
  HPY16_RS12390 (HPY16_12385) murP 2750143..2751588 (-) 1446 WP_001074155.1 PTS N-acetylmuramic acid transporter subunit IIBC -
  HPY16_RS12395 (HPY16_12390) murQ 2751612..2752514 (-) 903 WP_000687209.1 N-acetylmuramic acid 6-phosphate etherase -
  HPY16_RS12400 (HPY16_12395) - 2752745..2753593 (+) 849 WP_057556047.1 MurR/RpiR family transcriptional regulator -
  HPY16_RS12405 (HPY16_12400) - 2753614..2753925 (-) 312 WP_175248295.1 DUF3630 family protein -
  HPY16_RS12410 (HPY16_12405) recQ 2753918..2755753 (-) 1836 WP_069216210.1 ATP-dependent DNA helicase RecQ Machinery gene
  HPY16_RS12415 (HPY16_12410) rarD 2755979..2756821 (+) 843 WP_244914146.1 EamA family transporter RarD -
  HPY16_RS12420 (HPY16_12415) ggt 2756995..2758749 (+) 1755 WP_042987999.1 gamma-glutamyltransferase -
  HPY16_RS12425 (HPY16_12420) - 2758906..2759709 (+) 804 WP_002156730.1 AraC family transcriptional regulator -
  HPY16_RS12430 (HPY16_12425) - 2759784..2760452 (+) 669 WP_001004615.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69078.36 Da        Isoelectric Point: 7.1164

>NTDB_id=395089 HPY16_RS12410 WP_069216210.1 2753918..2755753(-) (recQ) [Vibrio cholerae strain L6G]
MTATLMAESSALPATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=395089 HPY16_RS12410 WP_069216210.1 2753918..2755753(-) (recQ) [Vibrio cholerae strain L6G]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCCCTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCACTCTGTTACCAGATCCCTGCGTTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGTT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTCTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCGGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGACCGCC
CGAACATCCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGTTATCTGGAAACGCAGCGTGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGCCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCTGA
CATGAACTGGCTGCGCCGCATGCTGGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCGCTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATCGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCAAAATCCGATAAGTTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTGCCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGACATGGCGGAGATCATGCCAACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

DEAD/DEAH box helicase (DEAD)

(33-188)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.641

97.054

0.394