Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GEV39_RS20675 Genome accession   NZ_CP045554
Coordinates   4478234..4479604 (-) Length   456 a.a.
NCBI ID   WP_009681282.1    Uniprot ID   A0A7W2JQ30
Organism   Pseudomonas sp. NY5710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4473234..4484604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV39_RS20655 (GEV39_21250) - 4473453..4473650 (-) 198 WP_009682654.1 YbdD/YjiX family protein -
  GEV39_RS20660 (GEV39_21255) - 4473664..4475730 (-) 2067 WP_009682653.1 carbon starvation CstA family protein -
  GEV39_RS20665 (GEV39_21260) - 4475896..4476261 (+) 366 WP_173891054.1 PilZ domain-containing protein -
  GEV39_RS20670 (GEV39_21265) - 4476522..4478042 (+) 1521 WP_029886890.1 nucleobase:cation symporter-2 family protein -
  GEV39_RS20675 (GEV39_21270) radA 4478234..4479604 (-) 1371 WP_009681282.1 DNA repair protein RadA Machinery gene
  GEV39_RS20680 (GEV39_21275) mscL 4479781..4480200 (+) 420 WP_029888025.1 large-conductance mechanosensitive channel protein MscL -
  GEV39_RS20685 (GEV39_21280) - 4480395..4481171 (-) 777 WP_173891055.1 ferredoxin--NADP reductase -
  GEV39_RS20690 (GEV39_21285) - 4481386..4482093 (+) 708 WP_173891056.1 autoinducer binding domain-containing protein -
  GEV39_RS20695 (GEV39_21290) - 4482190..4483314 (+) 1125 WP_173891057.1 methyltransferase -
  GEV39_RS20700 (GEV39_21295) - 4483431..4483586 (-) 156 WP_173891058.1 DUF2474 domain-containing protein -
  GEV39_RS20705 (GEV39_21300) cydB 4483596..4484603 (-) 1008 WP_173891059.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48785.29 Da        Isoelectric Point: 7.1315

>NTDB_id=395085 GEV39_RS20675 WP_009681282.1 4478234..4479604(-) (radA) [Pseudomonas sp. NY5710]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDKLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=395085 GEV39_RS20675 WP_009681282.1 4478234..4479604(-) (radA) [Pseudomonas sp. NY5710]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGTGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGTGCCGCTGCGCCCAGCAGTGGCCGCGCCGGTTGGA
CCGGGCAGCAGGCACAGATCAAGACCCTGGCAGAAGTCAGCGTCGAGGAGATCCCCCGTTTCACCACCAGCAGCACCGAG
CTCGACCGTGTGTTGGGTGGCGGCCTGGTAGATGGCTCGGTGGTGCTGATCGGTGGCGACCCCGGCATCGGCAAGTCGAC
CATTCTGTTGCAGACCCTGTGCAATATCGCCGTGGGCATGCCGGCACTGTATGTCACTGGCGAGGAGTCGCAGCAACAGG
TGGCCATGCGCTCGCGCCGCCTGGGCCTGCCCCAGGACAAGCTCAAGGTCATGACCGAAACCTGCATCGAGACGATCATT
GCCACAGCACGTGTCGAAAAGCCGCGGGTAATGGTGATCGACTCCATCCAGACCATCTTCACCGAGCAGTTGCAGTCAGC
CCCTGGTGGTGTTGCCCAGGTGCGTGAAAGCACGGCGTTGCTGGTGCGTTATGCCAAGCAAAGCGGCACGGCCATCTTCC
TGGTCGGCCACGTCACCAAGGAGGGCTCGCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTC
GAGGGCGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCCGTCAACGAGCTGGGCGTGTT
CGGCATGACCGACCGTGGCTTGAAGGAGGTATCCAACCCGTCGGCGATCTTCCTCAACCGTACCCAGGAAGAAGTGCCGG
GCAGCGTGGTGATGGCCACCTGGGAAGGCACCCGGCCCATGCTGGTCGAGGTGCAGGCGCTGGTCGACGACAGCCACCTG
GCCAACCCGCGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTACTGCACCGCCACGGCGG
CATACCCACCCACGACCAGGACGTGTTCCTCAATGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCTTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCACTGGCCCACGGCCTGCTGGTGTTCGGCGAGATCGGCTTGTCG
GGCGAGGTACGCCCGGTGCCAAGCGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGGGCGATCGTGCC
CAAGGGCAATGCACCGAAGGAGCCGCCAGCGGGGCTGCAGGTCATTGCCGTGACCCGGCTGGAGCAGGCCCTGGATGCAT
TGTTCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2JQ30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461

Multiple sequence alignment