Detailed information NTG0394922

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: HPY14_RS13035
• Genome accession: NZ_CP053798
• Coordinates: 2858888..2860723 (-)
• Length: 611 a.a.
• NCBI ID: WP_001918120.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SL5Y
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2853888..2865723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY14_RS13010 (HPY14_13010)	-	2854519..2855007 (+)	489	WP_000440285.1	TIGR00645 family protein	-
HPY14_RS13015 (HPY14_13015)	murP	2855113..2856558 (-)	1446	WP_094392707.1	PTS N-acetylmuramic acid transporter subunit IIBC	-
HPY14_RS13020 (HPY14_13020)	murQ	2856582..2857484 (-)	903	WP_162298904.1	N-acetylmuramic acid 6-phosphate etherase	-
HPY14_RS13025 (HPY14_13025)	-	2857715..2858563 (+)	849	WP_094392704.1	SIS domain-containing protein	-
HPY14_RS13030 (HPY14_13030)	-	2858584..2858895 (-)	312	WP_094392703.1	DUF3630 family protein	-
HPY14_RS13035 (HPY14_13035)	recQ	2858888..2860723 (-)	1836	WP_001918120.1	ATP-dependent DNA helicase RecQ	Machinery gene
HPY14_RS13040 (HPY14_13040)	rarD	2860950..2861792 (+)	843	WP_231807252.1	EamA family transporter RarD	-
HPY14_RS13045 (HPY14_13045)	ggt	2861966..2863720 (+)	1755	WP_162298905.1	gamma-glutamyltransferase	-
HPY14_RS13050 (HPY14_13050)	-	2863877..2864680 (+)	804	WP_095487533.1	AraC family transcriptional regulator	-
HPY14_RS13055 (HPY14_13055)	-	2864755..2865423 (+)	669	WP_095487531.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69128.42 Da
• Isoelectric Point: 7.1164

>NTDB_id=394922 HPY14_RS13035 WP_001918120.1 2858888..2860723(-) (recQ) [Vibrio cholerae strain SL5Y]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=394922 HPY14_RS13035 WP_001918120.1 2858888..2860723(-) (recQ) [Vibrio cholerae strain SL5Y]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACGGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACCTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTCGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCTTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGACCGCC
CGAACATCCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATCCGTTATCTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGTAGCCGTAAAAAAGTGGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGTTGTATGACCCCGCCGA
CATGAATTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAGGCGCAAACTTGTCGCCGCCAAGTGCTGCTTAATTATTTTGGCGAATATCGCGATAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAAAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACTTACGGCATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACGCTGCAACTGACCGAAGAAGCGCGCCCGCTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394