Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   DLI71_RS12440 Genome accession   NZ_CP045528
Coordinates   2566369..2566842 (-) Length   157 a.a.
NCBI ID   WP_100783490.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 6507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2561369..2571842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLI71_RS12425 (DLI71_12425) pilX 2563998..2564816 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DLI71_RS12430 (DLI71_12430) pilW 2564813..2565814 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  DLI71_RS12435 (DLI71_12435) pilV 2565815..2566375 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  DLI71_RS12440 (DLI71_12440) fimU 2566369..2566842 (-) 474 WP_100783490.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DLI71_RS12445 (DLI71_12445) ispH 2567012..2567962 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DLI71_RS12450 (DLI71_12450) gmk 2568085..2568714 (+) 630 WP_000015937.1 guanylate kinase -
  DLI71_RS12455 (DLI71_12455) rpoZ 2568787..2569065 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DLI71_RS12460 (DLI71_12460) - 2569104..2569233 (+) 130 Protein_2468 hypothetical protein -
  DLI71_RS12465 (DLI71_12465) - 2569273..2571378 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.45 Da        Isoelectric Point: 9.3085

>NTDB_id=394885 DLI71_RS12440 WP_100783490.1 2566369..2566842(-) (fimU) [Acinetobacter baumannii strain 6507]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITKDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=394885 DLI71_RS12440 WP_100783490.1 2566369..2566842(-) (fimU) [Acinetobacter baumannii strain 6507]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTAAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.089

100

0.981

Multiple sequence alignment