Detailed information NTG0394837

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: HPY13_RS13165
• Genome accession: NZ_CP053796
• Coordinates: 2880824..2882659 (-)
• Length: 611 a.a.
• NCBI ID: WP_001918120.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SL4G
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2875824..2887659

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY13_RS13140 (HPY13_13140)	-	2876455..2876943 (+)	489	WP_000440285.1	TIGR00645 family protein	-
HPY13_RS13145 (HPY13_13145)	murP	2877049..2878494 (-)	1446	WP_094392707.1	PTS N-acetylmuramic acid transporter subunit IIBC	-
HPY13_RS13150 (HPY13_13150)	murQ	2878518..2879420 (-)	903	WP_162298904.1	N-acetylmuramic acid 6-phosphate etherase	-
HPY13_RS13155 (HPY13_13155)	-	2879651..2880499 (+)	849	WP_094392704.1	SIS domain-containing protein	-
HPY13_RS13160 (HPY13_13160)	-	2880520..2880831 (-)	312	WP_094392703.1	DUF3630 family protein	-
HPY13_RS13165 (HPY13_13165)	recQ	2880824..2882659 (-)	1836	WP_001918120.1	ATP-dependent DNA helicase RecQ	Machinery gene
HPY13_RS13170 (HPY13_13170)	rarD	2882886..2883728 (+)	843	WP_001889839.1	EamA family transporter RarD	-
HPY13_RS13175 (HPY13_13175)	ggt	2883902..2885656 (+)	1755	WP_162298905.1	gamma-glutamyltransferase	-
HPY13_RS13180 (HPY13_13180)	-	2885813..2886616 (+)	804	WP_095487533.1	AraC family transcriptional regulator	-
HPY13_RS13185 (HPY13_13185)	-	2886691..2887359 (+)	669	WP_095487531.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69128.42 Da
• Isoelectric Point: 7.1164

>NTDB_id=394837 HPY13_RS13165 WP_001918120.1 2880824..2882659(-) (recQ) [Vibrio cholerae strain SL4G]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=394837 HPY13_RS13165 WP_001918120.1 2880824..2882659(-) (recQ) [Vibrio cholerae strain SL4G]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACGGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACCTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTCGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCTTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGACCGCC
CGAACATCCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATCCGTTATCTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGTAGCCGTAAAAAAGTGGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGTTGTATGACCCCGCCGA
CATGAATTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAGGCGCAAACTTGTCGCCGCCAAGTGCTGCTTAATTATTTTGGCGAATATCGCGATAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAAAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACTTACGGCATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACGCTGCAACTGACCGAAGAAGCGCGCCCGCTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394