Detailed information NTG0394833

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: HPY13_RS12055
• Genome accession: NZ_CP053796
• Coordinates: 2650875..2653697 (+)
• Length: 940 a.a.
• NCBI ID: WP_094392773.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SL4G
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2645875..2658697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY13_RS12035 (HPY13_12035)	csrD	2646069..2648081 (-)	2013	WP_032472224.1	RNase E specificity factor CsrD	-
HPY13_RS12040 (HPY13_12040)	ssb	2648205..2648738 (-)	534	WP_000168287.1	single-stranded DNA-binding protein	Machinery gene
HPY13_RS12045 (HPY13_12045)	qstR	2649030..2649674 (+)	645	WP_094392772.1	LuxR C-terminal-related transcriptional regulator	Regulator
HPY13_RS12050 (HPY13_12050)	galU	2649847..2650719 (+)	873	WP_175249833.1	UTP--glucose-1-phosphate uridylyltransferase GalU	-
HPY13_RS12055 (HPY13_12055)	uvrA	2650875..2653697 (+)	2823	WP_094392773.1	excinuclease ABC subunit UvrA	Machinery gene
HPY13_RS12060 (HPY13_12060)	-	2653762..2655546 (+)	1785	WP_175233945.1	oligosaccharyltransferase	-
HPY13_RS12065 (HPY13_12065)	-	2655625..2656743 (-)	1119	WP_032468786.1	alanine--glyoxylate aminotransferase family protein	-
HPY13_RS12070 (HPY13_12070)	lysC	2657208..2658563 (+)	1356	WP_055033250.1	lysine-sensitive aspartokinase 3	-

Sequence

Protein

• Length: 940 a.a.
• Molecular weight: 104329.83 Da
• Isoelectric Point: 6.5400

>NTDB_id=394833 HPY13_RS12055 WP_094392773.1 2650875..2653697(+) (uvrA) [Vibrio cholerae strain SL4G]
MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKG
EHVKTLENLAAQGFIRARIDGETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD
GEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQML
TALAEHYDFDVHTPFNKLSKKIQDIILHGSGRSEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYI
SNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIG
PGAGVHGGMVVAEGNVQEIIANPNSLTGQYLSGVKKIAVPTERTPRDKSKTVELKGAIGNNLKNVDLSIPVGLFTCVTGV
SGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQES
RSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFD
PVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDH
GNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLLN

Nucleotide

• Length: 2823 bp

>NTDB_id=394833 HPY13_RS12055 WP_094392773.1 2650875..2653697(+) (uvrA) [Vibrio cholerae strain SL4G]
ATGGACAAAATCGAAGTACGCGGCGCTCGTACCCATAACCTCAAAAATATCAATCTGACCATTCCTCGTGACAAATTGAT
TGTCATCACTGGCCTCTCTGGTTCAGGTAAATCCTCACTGGCTTTTGATACGCTGTACGCAGAAGGTCAACGGCGTTATG
TCGAATCACTCTCGGCTTATGCGCGCCAATTCCTTTCTCTGATGGAAAAGCCGGATGTAGACCATATTGAGGGGCTTTCA
CCCGCGATTTCGATTGAGCAGAAGTCCACTTCCCATAACCCACGCTCTACCGTGGGTACAATTACGGAAGTGTATGACTA
TTTACGTCTACTCTACGCTCGGGTTGGTGAGCCACGCTGCCCCGAACACCAAGTGCCACTAAAAGCGCAAACCATCAGTC
AGATGGTAGACAAAGTACTGGAATTGCCAGAAGGCAGCAAAATGATGCTGCTGGCAACCATAGTCAAAGAGCGCAAAGGC
GAACACGTTAAAACATTGGAAAACCTTGCTGCGCAGGGCTTTATTCGTGCGCGTATCGATGGTGAAACCTGCGATCTGAC
CGATCCACCGAAACTCGAACTGCACAAAAAGCATACCATTGAAGTAATTGTCGACCGTTTCAAAGTGCGCAGTGATCTGC
AGCAACGCTTAGCCGAATCCTTTGAAACCGCCTTGGAACTTTCCGGCGGTATCGTCGTTGTCGCCCCGATGGAAGGTGAT
GGCGAAGAGCAGATTTTCTCGGCTAACTTTGCTTGTCCACATTGCGGTTACAGCATGCGCGAGCTTGAACCACGCCTGTT
CTCCTTCAACAACCCAGCCGGTGCTTGTCCAACCTGTGATGGTTTAGGAGTACAGCAGTATTTCGATCCAGATCGAGTGA
TTCAAGATGCCAATTTAAGTTTGGCACAAGGTGCGATCCGCGGTTGGGATCAAAAGAACTTTTATTATTTCCAGATGCTG
ACTGCACTGGCCGAGCACTACGATTTTGATGTACACACTCCCTTCAATAAGCTGAGTAAAAAGATTCAGGACATCATTCT
GCACGGCTCTGGTCGTTCCGAGATTGAATTTAAGTACATCAATGATCGGGGTGATATTCGCCTTAAAAAACATCCTTTTG
AAGGAATTTTGCATAATTTGGAGCGCCGCTATCGCGATACCGAATCTAACTCGGTGCGTGAGGAGCTGGCCAAATACATC
TCCAACAAGCCTTGCAGCAGTTGTGATGGTACGCGCTTAAAAATCGAAGCGCGCAATGTGTTTATTAATGATACTGCGCT
GCCAACGATTGTAGAACTGAGCATTGCCGATGCGCTAACGTTCTTCCAAGAGCTCAAACTGGAAGGCCAACGTGCACAAA
TCGCTGAAAAAGTGATGAAAGAGATTAATGACCGGCTGCAATTTTTGGTCAATGTCGGGCTCAATTACTTAAATCTCTCG
CGCAGCGCCGAGACGCTTTCCGGTGGCGAAGCACAGCGTATTCGCCTAGCCAGTCAGATTGGTGCGGGTTTAGTCGGTGT
GATGTATGTCCTTGATGAACCGTCGATTGGCCTCCACCAACGCGACAACGAACGCTTGCTGCAAACCCTCACCCACTTAC
GCAATCTAGGTAATACTGTGTTAGTGGTTGAGCATGATGAAGATGCGATTCGCATGGCAGATCACGTGATTGATATTGGC
CCAGGTGCTGGCGTACACGGCGGCATGGTGGTTGCCGAAGGCAATGTGCAGGAAATCATCGCCAATCCAAACTCACTCAC
AGGTCAATATCTCAGTGGCGTGAAAAAAATTGCCGTACCAACTGAACGAACGCCACGCGATAAGAGCAAAACCGTTGAAC
TGAAAGGCGCGATAGGGAATAACCTGAAGAATGTCGATTTGTCGATCCCTGTCGGTCTGTTTACCTGTGTGACGGGCGTT
TCAGGTTCGGGAAAATCCACTCTGATCAACGATACCTTCTTTAAGATTGCCCATACCGCACTCAATGGCGCGACGACGGC
GACACCTGCGCCTTATCGCTCCATTCAAGGTCTAGAACACTTTGATAAAGTGATCGATATCGATCAGAGCCCAATTGGTC
GCACTCCTCGCTCCAACCCTGCCACCTACACCGGAATCTTCACTCCAATCCGTGAATTGTTTGCAGGAACACAAGAGTCT
CGCTCGCGTGGTTATCAGCCGGGACGCTTTAGTTTTAACGTGCGCGGAGGGCGCTGTGAAGCGTGCCAAGGCGATGGCGT
GATCAAAGTTGAAATGCACTTCTTACCCGATGTGTATGTGCCTTGTGATGTGTGTAAAGGTAAGCGCTATAACCGAGAAA
CCTTGGAAGTGCGCTACAAAGGCAAGACGATTGATGAAGTTTTGGACATGACCGTTGAAGACGCACGCGAGTTTTTTGAC
CCCGTACCTGTGATAGCACGTAAGCTGCAAACCTTGATGGATGTTGGGTTGTCCTACATTCGTCTTGGGCAATCAGCCAC
CACCTTATCAGGAGGTGAAGCGCAGCGGGTAAAATTAGCGCGTGAACTCTCCAAACGAGATACGGGCAAAACCCTGTATA
TTTTGGATGAACCAACCACGGGGCTACACTTCCACGATATTCAGCAACTATTGAGCGTTCTGCACCGCTTGCGTGACCAT
GGCAATACCGTGGTGGTGATTGAGCATAACTTGGATGTGATCAAAACGGCTGACTGGATCATCGATTTAGGCCCCGAAGG
CGGCCAAGGCGGCGGGCTGATTATTGCAGAAGGAACACCAGAAGATGTGGCGCAGATCGAAGCTTCACATACCGCACGTT
TCCTCAAGCCTTTGTTGAATTAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (130-236)

• ABC transporter (ABC_tran) (622-859)

• UvrA DNA-binding domain (UvrA_DNA-bind) (289-398)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	57.9	100	0.581
uvrA	Streptococcus pneumoniae TIGR4	57.9	100	0.581
uvrA	Streptococcus pneumoniae D39	57.9	100	0.581