Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   HPY13_RS07230 Genome accession   NZ_CP053796
Coordinates   1594862..1595242 (+) Length   126 a.a.
NCBI ID   WP_000045526.1    Uniprot ID   Q6BBL2
Organism   Vibrio cholerae strain SL4G     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1589862..1600242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS07205 (HPY13_07205) - 1590454..1591110 (+) 657 WP_000974697.1 HEAT repeat domain-containing protein -
  HPY13_RS07210 (HPY13_07210) - 1591121..1591966 (+) 846 WP_001002907.1 protein-glutamate O-methyltransferase CheR -
  HPY13_RS07215 (HPY13_07215) - 1591966..1592337 (+) 372 WP_000757478.1 PleD family two-component system response regulator -
  HPY13_RS07220 (HPY13_07220) - 1592346..1594619 (+) 2274 WP_162298855.1 chemotaxis protein CheA -
  HPY13_RS07225 (HPY13_07225) - 1594609..1594869 (+) 261 WP_001143862.1 hypothetical protein -
  HPY13_RS07230 (HPY13_07230) pilL-C 1594862..1595242 (+) 381 WP_000045526.1 response regulator Machinery gene
  HPY13_RS07235 (HPY13_07235) - 1595250..1596485 (+) 1236 WP_094392123.1 methyl-accepting chemotaxis protein -
  HPY13_RS07240 (HPY13_07240) - 1596540..1596854 (-) 315 WP_094392124.1 multidrug efflux SMR transporter -
  HPY13_RS07245 (HPY13_07245) - 1597010..1598524 (-) 1515 WP_094392125.1 cryptochrome/deoxyribodipyrimidine photo-lyase family protein -
  HPY13_RS07250 (HPY13_07250) - 1598680..1600086 (-) 1407 WP_094392126.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13674.04 Da        Isoelectric Point: 9.8959

>NTDB_id=394798 HPY13_RS07230 WP_000045526.1 1594862..1595242(+) (pilL-C) [Vibrio cholerae strain SL4G]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=394798 HPY13_RS07230 WP_000045526.1 1594862..1595242(+) (pilL-C) [Vibrio cholerae strain SL4G]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCTATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCCGGTAGTATTTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6BBL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

39.2

99.206

0.389