Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GE167_RS08165 Genome accession   NZ_CP045522
Coordinates   1675161..1675790 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain 5908.2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1670161..1680790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE167_RS08145 (GE167_08300) - 1670558..1672318 (-) 1761 WP_000156487.1 Lon protease family protein -
  GE167_RS08150 (GE167_08305) matP 1672503..1672955 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GE167_RS08155 (GE167_08310) ompA 1673031..1674077 (-) 1047 WP_005047463.1 porin OmpA -
  GE167_RS08160 (GE167_08315) sulA 1674433..1674942 (-) 510 WP_000288715.1 SOS-induced cell division inhibitor SulA -
  GE167_RS08165 (GE167_08320) sxy/tfoX 1675161..1675790 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GE167_RS08170 (GE167_08325) yccS 1675753..1677915 (-) 2163 WP_000875052.1 YccS family putative transporter -
  GE167_RS08175 (GE167_08330) - 1677925..1678371 (-) 447 WP_001261235.1 YccF domain-containing protein -
  GE167_RS08180 (GE167_08335) helD 1678494..1680548 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=394797 GE167_RS08165 WP_000839153.1 1675161..1675790(+) (sxy/tfoX) [Shigella flexneri strain 5908.2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=394797 GE167_RS08165 WP_000839153.1 1675161..1675790(+) (sxy/tfoX) [Shigella flexneri strain 5908.2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAGCTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment