Detailed information NTG0394748

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: HPY12_RS12350
• Genome accession: NZ_CP053794
• Coordinates: 2710171..2712993 (+)
• Length: 940 a.a.
• NCBI ID: WP_057567713.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain W10G
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2705171..2717993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY12_RS12330 (HPY12_12350)	csrD	2705365..2707377 (-)	2013	WP_001918202.1	RNase E specificity factor CsrD	-
HPY12_RS12335 (HPY12_12355)	ssb	2707501..2708034 (-)	534	WP_057567712.1	single-stranded DNA-binding protein	Machinery gene
HPY12_RS12340 (HPY12_12360)	qstR	2708326..2708970 (+)	645	WP_001188315.1	LuxR C-terminal-related transcriptional regulator	Regulator
HPY12_RS12345 (HPY12_12365)	galU	2709143..2710015 (+)	873	WP_001920788.1	UTP--glucose-1-phosphate uridylyltransferase GalU	-
HPY12_RS12350 (HPY12_12370)	uvrA	2710171..2712993 (+)	2823	WP_057567713.1	excinuclease ABC subunit UvrA	Machinery gene
HPY12_RS12355 (HPY12_12375)	-	2713058..2714842 (+)	1785	WP_057567714.1	oligosaccharyltransferase	-
HPY12_RS12360 (HPY12_12380)	-	2714921..2716039 (-)	1119	WP_057567715.1	alanine--glyoxylate aminotransferase family protein	-
HPY12_RS12365 (HPY12_12385)	lysC	2716503..2717858 (+)	1356	WP_000102989.1	lysine-sensitive aspartokinase 3	-

Sequence

Protein

• Length: 940 a.a.
• Molecular weight: 104269.73 Da
• Isoelectric Point: 6.4534

>NTDB_id=394748 HPY12_RS12350 WP_057567713.1 2710171..2712993(+) (uvrA) [Vibrio cholerae strain W10G]
MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKG
EHVKTLENLAAQGFIRARIDGETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD
GEEQIFSANFACPHCGYSMSELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNADLSLAQGAIRGWDQKNFYYFQML
TALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYI
SNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIG
PGAGVHGGMVVAEGNVQEIIANPNSLTGQYLSGVKKIAVPTERTPRDKSKTVELKGAVGNNLKNVDLSIPVGLFTCVTGV
SGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQES
RSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVHYKGKTIDEVLEMTVEDAREFFD
PVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDH
GNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLLN

Nucleotide

• Length: 2823 bp

>NTDB_id=394748 HPY12_RS12350 WP_057567713.1 2710171..2712993(+) (uvrA) [Vibrio cholerae strain W10G]
ATGGACAAAATCGAAGTACGCGGCGCTCGTACCCATAACCTCAAAAATATCAATCTGACCATTCCTCGTGACAAATTGAT
TGTCATCACCGGCCTCTCTGGTTCAGGTAAATCCTCACTGGCTTTTGATACGCTGTACGCAGAAGGTCAACGGCGTTATG
TCGAATCACTCTCGGCTTATGCGCGCCAATTCCTTTCTCTGATGGAAAAGCCGGATGTAGACCATATTGAGGGGCTTTCA
CCCGCGATTTCGATTGAGCAGAAGTCCACTTCCCATAACCCACGCTCTACTGTGGGTACGATTACGGAAGTGTATGACTA
TTTACGTCTACTCTACGCTCGGGTTGGTGAGCCACGCTGCCCCGAACACCAAGTGCCACTGAAAGCGCAAACCATCAGTC
AGATGGTAGACAAAGTATTGGAATTGCCAGAAGGCAGCAAAATGATGCTGCTGGCAACCATAGTCAAAGAGCGCAAAGGC
GAACACGTTAAAACATTGGAAAACCTTGCTGCGCAGGGCTTTATTCGTGCGCGTATCGATGGTGAAACCTGCGATCTGAC
CGATCCACCGAAACTCGAACTGCACAAAAAGCATACCATTGAAGTAATTGTCGACCGTTTCAAAGTGCGCAGTGATCTGC
AGCAACGCTTAGCCGAATCCTTTGAAACCGCCTTGGAACTTTCCGGCGGTATCGTCGTTGTCGCCCCGATGGAAGGTGAT
GGCGAAGAGCAGATTTTCTCGGCTAACTTTGCTTGTCCACATTGCGGTTACAGCATGAGCGAACTTGAACCACGCCTGTT
CTCCTTCAACAACCCAGCCGGTGCTTGTCCAACCTGTGATGGTTTAGGAGTACAGCAGTATTTCGATCCAGATCGAGTGA
TTCAAAATGCCGACTTAAGTTTGGCACAAGGCGCGATCCGCGGTTGGGATCAAAAGAACTTTTATTATTTCCAGATGCTG
ACTGCACTGGCCGAGCACTACGACTTTGATGTACACACGCCCTTCAATAAGCTGAGCAAAAAGATTCAGGAAATCATTCT
GCACGGCTCTGGTCGCACCGAAATTGAATTTAAGTACATCAATGATCGGGGTGATATTCGCCTTAAAAAACATCCTTTTG
AAGGGATTTTGCATAATTTGGAGCGCCGCTATCGCGATACCGAATCTAACTCGGTGCGTGAGGAGCTGGCAAAATACATC
TCCAACAAGCCTTGCAGCAGTTGTGATGGTACGCGCTTAAAAATCGAAGCACGCAATGTGTTTATTAATGATACTGCGTT
GCCAACGATTGTAGAACTGAGCATTGCTGATGCGCTAACGTTCTTCCAAGAGCTCAAACTGGAAGGCCAACGTGCACAAA
TCGCTGAAAAAGTGATGAAAGAGATTAATGACCGGCTGCAATTTTTGGTCAATGTCGGGCTCAATTACTTAAATCTCTCG
CGCAGCGCCGAGACGCTTTCCGGTGGCGAAGCTCAACGTATTCGCCTAGCTAGTCAGATTGGTGCGGGTTTAGTCGGTGT
GATGTATGTCCTTGATGAACCGTCGATTGGCCTCCACCAACGCGACAACGAACGCTTGCTGCAAACCCTCACCCACTTAC
GCAATCTAGGTAATACTGTGTTAGTGGTTGAGCATGATGAAGATGCGATTCGCATGGCAGATCACGTGATTGATATTGGC
CCAGGTGCTGGCGTACACGGCGGCATGGTGGTTGCCGAAGGCAATGTGCAGGAAATCATCGCCAATCCAAACTCACTCAC
AGGTCAATATCTCAGTGGCGTGAAAAAAATTGCCGTACCAACTGAACGAACGCCACGCGATAAGAGCAAAACCGTTGAAC
TGAAAGGCGCGGTAGGGAATAACCTGAAGAATGTCGATTTGTCGATCCCTGTCGGTCTGTTTACCTGTGTGACGGGCGTT
TCAGGTTCGGGAAAATCCACTCTGATCAACGATACCTTCTTTAAGATTGCCCATACCGCACTCAATGGCGCAACGACGGC
GACACCTGCTCCTTATCGCTCCATTCAAGGTCTAGAACACTTTGATAAAGTGATCGATATCGATCAGAGCCCAATTGGTC
GCACTCCTCGCTCCAACCCTGCCACTTACACCGGAATCTTCACTCCAATCCGTGAATTGTTTGCAGGAACACAAGAGTCT
CGCTCGCGTGGTTATCAGCCGGGACGCTTTAGTTTCAACGTGCGCGGAGGGCGATGTGAAGCGTGTCAAGGCGATGGCGT
GATCAAAGTTGAAATGCACTTCTTACCCGATGTGTATGTGCCTTGTGATGTGTGTAAAGGTAAGCGCTATAACCGAGAAA
CACTGGAAGTGCACTACAAAGGCAAGACGATTGATGAAGTTTTGGAAATGACCGTTGAAGACGCACGCGAGTTTTTTGAC
CCAGTACCTGTGATAGCACGTAAGCTACAAACCTTGATGGATGTTGGATTGTCCTACATTCGTCTTGGGCAATCAGCCAC
CACCTTATCAGGAGGTGAAGCGCAGCGGGTAAAATTAGCGCGTGAACTCTCCAAACGAGATACGGGCAAAACCCTGTATA
TTTTGGATGAACCAACCACGGGCCTACACTTCCACGATATTCAGCAACTATTGAGCGTTCTGCACCGCTTGCGTGACCAT
GGCAATACCGTGGTGGTGATTGAGCATAACTTGGATGTGATCAAAACGGCTGACTGGATCATCGATTTAGGCCCCGAAGG
CGGCCAAGGCGGCGGACTGATTATTGCAGAAGGAACACCAGAAGATGTGGCGCAGATCGAAGCTTCACATACCGCACGTT
TCCTCAAGCCTTTGTTGAATTAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (130-236)

• ABC transporter (ABC_tran) (622-859)

• UvrA DNA-binding domain (UvrA_DNA-bind) (289-398)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	57.794	100	0.58
uvrA	Streptococcus pneumoniae TIGR4	57.794	100	0.58
uvrA	Streptococcus pneumoniae D39	57.794	100	0.58