Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPY12_RS09290 Genome accession   NZ_CP053794
Coordinates   2028996..2029598 (-) Length   200 a.a.
NCBI ID   WP_001260576.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2023996..2034598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS09260 (HPY12_09285) - 2024248..2024703 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  HPY12_RS09265 (HPY12_09290) - 2024828..2025895 (+) 1068 WP_000337335.1 PLP-dependent cysteine synthase family protein -
  HPY12_RS09270 (HPY12_09295) sohB 2026020..2027081 (-) 1062 WP_000394895.1 protease SohB -
  HPY12_RS09275 (HPY12_09300) - 2027240..2027983 (+) 744 WP_001109956.1 YciK family oxidoreductase -
  HPY12_RS09280 (HPY12_09305) - 2028077..2028514 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  HPY12_RS09285 (HPY12_09310) - 2028655..2028903 (+) 249 WP_055043851.1 YkgJ family cysteine cluster protein -
  HPY12_RS09290 (HPY12_09315) recR 2028996..2029598 (-) 603 WP_001260576.1 recombination mediator RecR Machinery gene
  HPY12_RS09295 (HPY12_09320) - 2029613..2029942 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  HPY12_RS09300 (HPY12_09325) dnaX 2030013..2032091 (-) 2079 WP_057568711.1 DNA polymerase III subunit gamma/tau -
  HPY12_RS09305 (HPY12_09330) apt 2032110..2032655 (-) 546 WP_057568710.1 adenine phosphoribosyltransferase -
  HPY12_RS09310 (HPY12_09335) - 2032787..2033185 (-) 399 WP_057568709.1 YbaN family protein -
  HPY12_RS18870 - 2033185..2033316 (-) 132 WP_000013199.1 hypothetical protein -
  HPY12_RS09315 (HPY12_09340) - 2033486..2034577 (-) 1092 WP_057568827.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21912.07 Da        Isoelectric Point: 6.3274

>NTDB_id=394725 HPY12_RS09290 WP_001260576.1 2028996..2029598(-) (recR) [Vibrio cholerae strain W10G]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGIQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRKDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=394725 HPY12_RS09290 WP_001260576.1 2028996..2029598(-) (recR) [Vibrio cholerae strain W10G]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCGTTACGCTGCCTGCCGGGCGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGCGGTATACAACTGGCTGAGGCACTGAGTCAAGCGATGGTCGAAA
TCGGTCATTGTCAGGAGTGTCGAACCTTTACCGAGCAGGATGTTTGCCACATCTGTAGCAACCCGAAACGTAAAGAAAAT
GGTCAGTTGTGTGTAGTCGAAAGTCCGGCAGATATTGCTGCGTTGGAAGCAACCGGTCAGTTTTCTGGTCGCTATTTTGT
GCTGATGGGTCACCTGTCACCACTGGATGGTATTGGTCCGAGCGATATTGGCTTGGATACTCTGGATTATCGCCTACAGC
GCAAAGACATCAGTGAGGTGATCCTTGCCACTAACCCAACTGTGGAAGGTGAAGCCACTGCGCAATACATTGCGGAGTTG
TGTCGTGAACATCAAGTGACAGCGAGCCGAATTGCCCACGGTGTCCCCGTGGGGGGCGAGCTAGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTAGGTCGTCATAAGCTGTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435