Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY12_RS08440 Genome accession   NZ_CP053794
Coordinates   1846184..1847608 (+) Length   474 a.a.
NCBI ID   WP_057568755.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841184..1852608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS08415 (HPY12_08440) - 1842027..1842413 (+) 387 WP_175234212.1 hypothetical protein -
  HPY12_RS08420 (HPY12_08445) - 1842467..1844086 (+) 1620 WP_175234214.1 DNA sulfur modification protein DndB -
  HPY12_RS08425 (HPY12_08450) - 1844121..1844381 (+) 261 WP_172896263.1 hypothetical protein -
  HPY12_RS08430 (HPY12_08455) - 1844516..1844812 (+) 297 WP_002051850.1 AlpA family transcriptional regulator -
  HPY12_RS08435 (HPY12_08460) - 1844809..1846002 (-) 1194 WP_175234216.1 site-specific integrase -
  HPY12_RS08440 (HPY12_08465) sbcB 1846184..1847608 (+) 1425 WP_057568755.1 exodeoxyribonuclease I Machinery gene
  HPY12_RS08445 (HPY12_08470) - 1847640..1848014 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY12_RS08450 (HPY12_08475) - 1848005..1848679 (+) 675 WP_000266242.1 LrgB family protein -
  HPY12_RS08455 (HPY12_08480) cdd 1848849..1849736 (+) 888 WP_001245905.1 cytidine deaminase -
  HPY12_RS08460 (HPY12_08485) - 1849895..1850770 (+) 876 WP_000462871.1 AEC family transporter -
  HPY12_RS08465 (HPY12_08490) purT 1850924..1852099 (+) 1176 WP_057568754.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54466.79 Da        Isoelectric Point: 5.9006

>NTDB_id=394716 HPY12_RS08440 WP_057568755.1 1846184..1847608(+) (sbcB) [Vibrio cholerae strain W10G]
MKNDEQPSFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTSENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=394716 HPY12_RS08440 WP_057568755.1 1846184..1847608(+) (sbcB) [Vibrio cholerae strain W10G]
ATGAAAAATGATGAACAGCCGTCATTCTTCTTTTTCGACTACGAGACTTGGGGGGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTATCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTTCCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCTCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTAGAAAAACTCGCTTGCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

97.89

100

0.979