Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GE021_RS08000 Genome accession   NZ_CP053792
Coordinates   1621791..1622399 (+) Length   202 a.a.
NCBI ID   WP_003044766.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1616791..1627399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS07970 (GE021_007965) - 1617014..1617496 (+) 483 WP_093998972.1 S-ribosylhomocysteine lyase -
  GE021_RS07975 (GE021_007970) - 1617655..1619133 (-) 1479 WP_164401789.1 cell division site-positioning protein MapZ family protein -
  GE021_RS07980 (GE021_007975) - 1619147..1620301 (-) 1155 WP_164407689.1 class I SAM-dependent RNA methyltransferase -
  GE021_RS07990 (GE021_007985) gpsB 1620746..1621072 (-) 327 WP_003044762.1 cell division regulator GpsB -
  GE021_RS07995 (GE021_007990) - 1621194..1621709 (-) 516 WP_003044763.1 DUF1273 domain-containing protein -
  GE021_RS08000 (GE021_007995) recU 1621791..1622399 (+) 609 WP_003044766.1 Holliday junction resolvase RecU Machinery gene
  GE021_RS08005 (GE021_008000) pbp1a 1622386..1624554 (+) 2169 WP_164407687.1 penicillin-binding protein PBP1A -
  GE021_RS08010 (GE021_008005) pepC 1624610..1625941 (-) 1332 WP_003044773.1 aminopeptidase C -
  GE021_RS08015 (GE021_008010) nadE 1626118..1626942 (-) 825 WP_003044779.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23527.03 Da        Isoelectric Point: 9.5636

>NTDB_id=394642 GE021_RS08000 WP_003044766.1 1621791..1622399(+) (recU) [Streptococcus canis strain HL_77_1]
MVNYPHNLIRQKPNSVQKRSKQNKVDFANRGMSFEATINATNDYYLSQQIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMVAVLEQQGICFVLLHFSTLKETYYLPAKALIDFYQID
HGNKSMPLDYIRKHGFEIVMGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=394642 GE021_RS08000 WP_003044766.1 1621791..1622399(+) (recU) [Streptococcus canis strain HL_77_1]
ATGGTCAACTACCCTCATAATCTTATTCGGCAAAAACCAAATTCTGTTCAAAAGCGATCAAAACAAAATAAGGTGGATTT
TGCTAACCGAGGCATGTCCTTTGAAGCAACTATCAATGCGACAAACGATTATTATTTGTCACAGCAAATAGCTGTTATTC
ATAAAAAACCTACCCCTATCCAAATTGTTAAGGTAGACTACCCTAAGCGTAGTCGCGCTAAGATTGTAGAAGCTTACTTT
AGACAGGCTTCCACAACTGACTATTCTGGTGTTTACAAGGGGCATTATATTGATTTTGAAGCCAAGGAAACCAGACAAAA
AACAGCCATGCCCATGAAAAACTTTCATCTTCATCAGATTGAACACATGGTAGCTGTTTTGGAGCAACAAGGAATTTGTT
TTGTCCTTCTTCACTTTTCGACCCTCAAGGAAACCTACTATTTACCTGCTAAAGCACTGATTGATTTTTATCAAATCGAT
CACGGGAACAAATCCATGCCCCTCGATTATATCAGAAAACATGGCTTTGAGATAGTGATGGGAGCATTTCCTCAGGTCCC
TTACTTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495