Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GE021_RS06495 Genome accession   NZ_CP053792
Coordinates   1296563..1298770 (-) Length   735 a.a.
NCBI ID   WP_125074670.1    Uniprot ID   A0A3P5Y4T6
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291563..1303770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS06465 (GE021_006465) - 1292119..1292940 (-) 822 WP_125074675.1 ZIP family metal transporter -
  GE021_RS06470 (GE021_006470) - 1292958..1293746 (-) 789 WP_164407259.1 Nif3-like dinuclear metal center hexameric protein -
  GE021_RS06475 (GE021_006475) - 1293736..1294422 (-) 687 WP_125074673.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  GE021_RS06480 (GE021_006480) nth 1294494..1295150 (-) 657 WP_125074672.1 endonuclease III -
  GE021_RS06485 (GE021_006485) - 1295147..1295830 (-) 684 WP_125074671.1 DnaD domain-containing protein -
  GE021_RS06490 (GE021_006490) - 1295911..1296429 (-) 519 WP_003043920.1 adenine phosphoribosyltransferase -
  GE021_RS06495 (GE021_006495) recJ 1296563..1298770 (-) 2208 WP_125074670.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GE021_RS06500 (GE021_006500) - 1298767..1299531 (-) 765 WP_093998930.1 SDR family oxidoreductase -
  GE021_RS06505 (GE021_006505) rnz 1299531..1300460 (-) 930 WP_125074669.1 ribonuclease Z -
  GE021_RS06510 (GE021_006510) - 1300475..1301110 (-) 636 WP_164407266.1 cystathionine beta-lyase -
  GE021_RS06515 (GE021_006515) hflX 1301103..1302341 (-) 1239 WP_125074667.1 GTPase HflX -
  GE021_RS06520 (GE021_006520) miaA 1302414..1303313 (-) 900 WP_125074666.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  GE021_RS06525 (GE021_006525) - 1303448..1303624 (+) 177 WP_125074665.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82080.81 Da        Isoelectric Point: 4.6340

>NTDB_id=394625 GE021_RS06495 WP_125074670.1 1296563..1298770(-) (recJ) [Streptococcus canis strain HL_77_1]
MIKSKYSWKIEDKKPDDGFFKLAKAKGLTQTAAQLIYERGIRTEEALDDFLVADLSQLHDPYLLHDMAKAVPRIRQAIEE
GERILIYGDYDADGMTSASIVKETLDMMGAEPLVYLPNRFTDGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAISYAQ
AQGVDVIVTDHHSLPEELPEAFAIIHPEHPDADYPFKHLAGCGVAFKLATALLENLPTDCLDLVAIGTIADMVSLTGENR
VLVKNGLTMLKHTERIGLQELMTLSHIDLEHFNEDAIGFQIAPQLNALGRLDDPNPAIELLTGFDDQKAQNIALMIKEKN
EERKALVQEIFDQAMAMVDDQKPVQVLAQAGWHPGVLGIVAGRIMETIGQTVVVLTIDNGFAKGSARSLEAINIFEALSG
KRELFTAFGGHAGAAGMTLPLDNLEALSDLLCQFVIERGLDQIAKNTLTIDEGLSLEELSLDTLKSLDKLAPYGMDHPKP
VFYVKDITVSQARTMGQDQSHLKFKVSQGKTSFDVLAFGQGSQIQDFQQATGLELAVTLSVNHWNGNTSLQFMLVDARVD
GVQLLDLRTKTAKIPEGIPTIEEDPNAKVVLINDIPEDFKSWRTQFANKTFDAIYFKNQINHPYYLTGFGSREQFAKLYK
TIYQFPEFDLRYKLTDLSRYLNIDKLLLIKLIQIFEELAFVTIEDGLMTVNPQAQKREISESHIYQELKELVKFQEIMAL
ASPQEMYDYLVHSKS

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=394625 GE021_RS06495 WP_125074670.1 1296563..1298770(-) (recJ) [Streptococcus canis strain HL_77_1]
ATGATTAAATCCAAATATAGCTGGAAAATAGAAGACAAGAAGCCAGATGATGGCTTCTTTAAGCTAGCAAAGGCAAAAGG
TCTGACCCAGACCGCCGCTCAGTTGATCTATGAGCGAGGGATAAGGACTGAAGAAGCCTTAGATGACTTTCTGGTAGCTG
ATTTGTCGCAACTGCATGACCCCTATTTGCTACATGACATGGCAAAGGCTGTCCCAAGGATTCGCCAAGCTATTGAAGAG
GGCGAACGGATTCTCATTTACGGCGATTATGATGCTGATGGCATGACGTCGGCATCTATTGTCAAGGAAACCTTAGACAT
GATGGGAGCAGAGCCTTTAGTTTATCTCCCTAACCGTTTTACAGATGGTTATGGTCCCAATCAGAGCGTCTATAAATACT
TTATTGAGCAGGAAGCTGTGTCCTTAATTATCACGGTTGATAATGGAGTAGCAGGGCACGAAGCGATTAGCTATGCCCAA
GCACAGGGAGTTGATGTTATTGTGACTGACCATCATAGCCTGCCTGAAGAATTGCCAGAGGCCTTTGCCATCATTCACCC
TGAGCATCCCGATGCTGACTATCCTTTTAAACACTTAGCTGGCTGTGGCGTTGCCTTTAAATTGGCAACTGCTTTGCTAG
AAAATTTGCCAACAGACTGTCTAGACTTGGTAGCCATTGGAACAATTGCTGATATGGTAAGTTTGACAGGTGAAAACCGT
GTCTTAGTCAAAAATGGCTTGACCATGCTCAAGCATACTGAGAGGATCGGTTTGCAGGAACTAATGACCCTATCACATAT
TGATTTAGAACATTTTAATGAAGATGCTATTGGTTTTCAGATTGCTCCGCAATTAAATGCTTTAGGCCGCTTGGATGACC
CTAATCCAGCCATTGAGCTGCTGACAGGTTTTGATGACCAAAAAGCCCAAAACATTGCCTTGATGATTAAGGAAAAAAAT
GAAGAGCGTAAGGCTTTAGTCCAAGAGATTTTTGATCAAGCGATGGCTATGGTTGACGATCAAAAACCTGTTCAAGTCTT
AGCTCAAGCCGGCTGGCACCCTGGTGTTTTGGGGATTGTCGCTGGTCGTATCATGGAAACTATTGGACAAACGGTAGTTG
TCTTGACCATTGATAATGGCTTTGCAAAAGGCTCGGCCAGAAGTTTAGAAGCTATTAATATTTTTGAAGCTTTGAGTGGT
AAGCGTGAATTATTTACAGCGTTTGGGGGGCATGCTGGTGCAGCAGGAATGACCCTTCCCCTTGATAACTTAGAAGCTCT
CTCAGACTTGCTCTGTCAGTTTGTGATAGAGCGTGGCTTAGATCAGATTGCCAAAAATACACTGACTATTGATGAAGGTT
TGTCATTGGAGGAACTTAGTCTTGATACTTTAAAGAGTTTAGATAAATTAGCTCCTTATGGTATGGATCATCCCAAGCCG
GTTTTTTATGTCAAGGACATAACAGTTAGCCAAGCGCGTACCATGGGGCAGGACCAGAGTCATCTTAAATTCAAAGTCAG
TCAGGGCAAAACTTCCTTTGACGTACTGGCTTTTGGTCAAGGAAGCCAGATACAGGACTTTCAACAAGCTACTGGTTTAG
AATTAGCAGTGACCTTATCTGTCAACCATTGGAATGGGAACACGAGTCTCCAATTCATGTTAGTAGATGCTCGTGTTGAC
GGAGTACAACTTCTTGATTTAAGGACAAAAACGGCGAAAATTCCTGAAGGTATTCCGACTATTGAAGAAGATCCAAATGC
CAAAGTCGTTCTGATTAATGACATTCCTGAAGATTTCAAAAGCTGGCGTACCCAGTTCGCTAATAAGACTTTTGACGCTA
TTTATTTTAAAAATCAGATTAACCACCCTTACTACCTAACGGGATTTGGTAGTCGTGAACAGTTTGCTAAACTCTACAAA
ACCATCTACCAATTTCCCGAATTTGATTTGCGTTATAAGTTGACTGACTTGAGTCGCTACCTAAACATTGACAAACTCTT
ATTGATTAAGCTCATTCAGATTTTTGAAGAGTTAGCTTTTGTGACGATTGAAGATGGATTGATGACGGTTAACCCTCAAG
CGCAAAAACGAGAGATTTCAGAGAGTCACATTTACCAAGAGTTAAAAGAATTGGTGAAGTTTCAGGAAATCATGGCATTG
GCTAGCCCGCAGGAGATGTACGATTATTTGGTTCATTCCAAATCATAA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(450-556)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(586-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5Y4T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

63.649

100

0.641
  recJ Bacillus subtilis subsp. subtilis str. 168

35.422

100

0.377