Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GE021_RS05370 Genome accession   NZ_CP053792
Coordinates   1064167..1065237 (-) Length   356 a.a.
NCBI ID   WP_125074260.1    Uniprot ID   A0A3P5Y5X7
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059167..1070237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS05345 (GE021_005345) - 1059907..1060905 (+) 999 WP_125074265.1 polyprenyl synthetase family protein -
  GE021_RS05350 (GE021_005350) - 1060999..1061505 (+) 507 WP_125074264.1 FMN-binding protein -
  GE021_RS05355 (GE021_005355) - 1061576..1062625 (+) 1050 WP_125074263.1 FAD:protein FMN transferase -
  GE021_RS05360 (GE021_005360) - 1062615..1063565 (+) 951 WP_125074262.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GE021_RS05365 (GE021_005365) - 1063650..1064090 (-) 441 WP_125074261.1 NusG domain II-containing protein -
  GE021_RS05370 (GE021_005370) xerS 1064167..1065237 (-) 1071 WP_125074260.1 tyrosine recombinase XerS Machinery gene
  GE021_RS05375 (GE021_005375) - 1065683..1066375 (+) 693 WP_125074259.1 helix-turn-helix transcriptional regulator -
  GE021_RS05380 (GE021_005380) tnpA 1066620..1067093 (-) 474 WP_172774162.1 IS200/IS605 family transposase -
  GE021_RS05385 (GE021_005385) - 1067300..1068781 (-) 1482 WP_254388136.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41395.58 Da        Isoelectric Point: 9.6653

>NTDB_id=394620 GE021_RS05370 WP_125074260.1 1064167..1065237(-) (xerS) [Streptococcus canis strain HL_77_1]
MRRELLLEKIEAYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLIDADLTQAPKIADIDLSTLEHLTKKDLE
AYVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNMMVIEVTRKGGKRDS
VNVASFAKVYLEAYLAIRKNRYKAEKQDVAFFLTEYRGVPNRMDASSIEKMVAKYSEGFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=394620 GE021_RS05370 WP_125074260.1 1064167..1065237(-) (xerS) [Streptococcus canis strain HL_77_1]
ATGAGACGTGAGTTACTACTGGAAAAAATTGAAGCCTACAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTCCCGTACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATAG
ATGCTGATTTGACTCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACTCTGGAGCACCTTACTAAGAAGGATTTAGAG
GCTTATGTGCTTTATTTGCGAGAGCGACCTTCTCTCAACACCTATTCAACCAAAGAGGGGCTTTCTCAAACCACAATTAA
TCGGACCTTGTCCGCCCTATCAAGTCTTTACAAATACTTGACTGAAGAGGTCGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTATCAACAAAAAAGAAAAAAGAAACCCTAGCATCCAGAGCAGAAAATATTAAACAAAAA
CTATTTTTAGGAGATGAAACTCTGGCTTTCTTAGACTATGTAGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATCGCTCTACTGCTTGCTTCTGGTGTTCGTTTGTCTGAAG
CGGTGAATCTTGATCTCAAAGACATCAATCTGAATATGATGGTTATTGAAGTCACTCGTAAGGGTGGGAAACGTGATTCG
GTAAATGTAGCAAGTTTTGCTAAAGTCTATTTAGAAGCTTATCTGGCCATTCGCAAGAACCGTTACAAGGCCGAAAAACA
AGATGTCGCTTTCTTTTTAACGGAATACCGTGGCGTTCCTAATCGAATGGACGCTTCTAGTATTGAAAAAATGGTTGCTA
AGTACTCTGAGGGATTTAAAATTCGTGTGACTCCCCATAAATTACGACACACGTTAGCGACAAGGCTCTATGATGCTACT
AAATCTCAGGTTTTGGTTAGTCATCAATTAGGCCATGCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAGAAAAATGCTTTAGATAAACTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5Y5X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

81.461

100

0.815