Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GE021_RS00230 Genome accession   NZ_CP053792
Coordinates   32508..33272 (+) Length   254 a.a.
NCBI ID   WP_125074324.1    Uniprot ID   A0A3P5Y9Q7
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27508..38272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS00210 (GE021_000210) mreC 28454..29272 (+) 819 WP_125074328.1 rod shape-determining protein MreC -
  GE021_RS11490 (GE021_000215) mreD 29272..29772 (+) 501 WP_125074327.1 rod shape-determining protein MreD -
  GE021_RS00220 (GE021_000220) pcsB 29868..31097 (+) 1230 WP_125074326.1 peptidoglycan hydrolase PcsB -
  GE021_RS00225 (GE021_000225) - 31330..32292 (+) 963 WP_125074325.1 ribose-phosphate diphosphokinase -
  GE021_RS00230 (GE021_000230) recO 32508..33272 (+) 765 WP_125074324.1 DNA repair protein RecO Machinery gene
  GE021_RS00235 (GE021_000235) plsX 33382..34389 (+) 1008 WP_125074323.1 phosphate acyltransferase PlsX -
  GE021_RS00240 (GE021_000240) - 34382..34624 (+) 243 WP_003045880.1 phosphopantetheine-binding protein -
  GE021_RS00245 (GE021_000245) - 34749..36190 (+) 1442 Protein_27 IS1182 family transposase -
  GE021_RS00250 (GE021_000250) purC 36338..37048 (+) 711 WP_125074322.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30034.26 Da        Isoelectric Point: 5.5875

>NTDB_id=394569 GE021_RS00230 WP_125074324.1 32508..33272(+) (recO) [Streptococcus canis strain HL_77_1]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSRLASVVQPLTVADFIFKLNESGLSYIDDYNQVDTYRY
INEDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEILTNIFEIQVLERFGISINFHDCAFCHRVGL
PFDFSHQYSGVLCPEHYHKDERRNHLDPNVIYLLDRFQTIQFEELRTISLKDDMKRKLRHFIDELYNDYVGLQLKSKIFI
DDLSKWGNIMKQKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=394569 GE021_RS00230 WP_125074324.1 32508..33272(+) (recO) [Streptococcus canis strain HL_77_1]
ATGCAGTTAAACGAGTCTTTGGGGATTGTCCTTTTTAATAGGAATTATCGGGAAGATGATAAATTGGTCAAGATATTTAC
GGAGACGGCTGGGAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAGACTTGCTTCGGTGGTTCAGCCCTTGACGG
TTGCTGACTTTATCTTTAAGTTAAATGAGTCAGGTCTTTCCTACATTGATGATTATAACCAGGTGGATACTTATCGGTAC
ATTAATGAAGATCTCTTTCGACTATCTTATGCAAGCTATGTGGTGGCTTTGGCAGATGCTGCTATTTCGGATAATGAACC
TGATCCTCATTTATTCGCTTTTTTGAAAAAGACCCTTGATTTGATGGAAGAGGGGTTAGATTATGAGATTTTAACCAATA
TTTTTGAAATTCAAGTGTTAGAACGGTTTGGAATTAGCATTAATTTTCATGACTGTGCTTTTTGTCATCGTGTGGGTCTG
CCATTTGATTTTTCACATCAGTATTCAGGAGTGCTTTGTCCAGAACATTATCATAAAGATGAACGTCGTAATCATCTAGA
TCCCAATGTGATTTATTTGTTAGATCGTTTTCAAACCATTCAGTTTGAGGAGTTAAGGACCATTTCTTTGAAGGATGATA
TGAAAAGAAAGCTTCGGCATTTTATTGATGAATTGTATAACGATTATGTAGGGCTTCAGTTGAAAAGCAAGATCTTTATT
GACGATTTGAGTAAATGGGGTAACATTATGAAACAAAAGGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5Y9Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.306

97.638

0.618