Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GEA60_RS07900 Genome accession   NZ_CP045487
Coordinates   1701361..1701987 (+) Length   208 a.a.
NCBI ID   WP_046888171.1    Uniprot ID   -
Organism   Enterobacter cloacae strain 14240244101     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696361..1706987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEA60_RS07880 - 1696762..1698522 (-) 1761 WP_203462091.1 AAA family ATPase -
  GEA60_RS07885 matP 1698709..1699161 (+) 453 WP_046888170.1 macrodomain Ter protein MatP -
  GEA60_RS07890 ompA 1699227..1700279 (-) 1053 WP_014831316.1 porin OmpA -
  GEA60_RS07895 sulA 1700634..1701143 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  GEA60_RS07900 sxy/tfoX 1701361..1701987 (+) 627 WP_046888171.1 TfoX/Sxy family DNA transformation protein Regulator
  GEA60_RS07905 yccS 1701944..1704106 (-) 2163 WP_203462092.1 YccS family putative transporter -
  GEA60_RS07910 - 1704126..1704572 (-) 447 WP_014831318.1 YccF domain-containing protein -
  GEA60_RS07915 helD 1704695..1706749 (+) 2055 WP_203462093.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24060.67 Da        Isoelectric Point: 9.2254

>NTDB_id=394547 GEA60_RS07900 WP_046888171.1 1701361..1701987(+) (sxy/tfoX) [Enterobacter cloacae strain 14240244101]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSFYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=394547 GEA60_RS07900 WP_046888171.1 1701361..1701987(+) (sxy/tfoX) [Enterobacter cloacae strain 14240244101]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCAAAGTACTGTGTCAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGTCCGATCCTGCTTAAC
TACTATCGTGTGGATGACGGACTCTGGCAGGACCGGGAGCGGTTGCTTCAGCTTTCCTTTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAGCGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTCCTGCTCT
GTGAAGCTGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCTATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAGAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCCCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment