Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GE022_RS07945 Genome accession   NZ_CP053790
Coordinates   1621861..1622469 (+) Length   202 a.a.
NCBI ID   WP_003044766.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1616861..1627469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS07915 (GE022_007905) - 1617083..1617565 (+) 483 WP_164405066.1 S-ribosylhomocysteine lyase -
  GE022_RS07920 (GE022_007910) - 1617724..1619202 (-) 1479 WP_164405067.1 cell division site-positioning protein MapZ family protein -
  GE022_RS07925 (GE022_007915) - 1619216..1620370 (-) 1155 WP_164405068.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  GE022_RS07935 (GE022_007925) gpsB 1620815..1621141 (-) 327 WP_003044762.1 cell division regulator GpsB -
  GE022_RS07940 (GE022_007930) - 1621264..1621779 (-) 516 WP_003044763.1 DUF1273 domain-containing protein -
  GE022_RS07945 (GE022_007935) recU 1621861..1622469 (+) 609 WP_003044766.1 Holliday junction resolvase RecU Machinery gene
  GE022_RS07950 (GE022_007940) pbp1a 1622456..1624624 (+) 2169 WP_093998969.1 penicillin-binding protein PBP1A -
  GE022_RS07955 (GE022_007945) pepC 1624680..1626011 (-) 1332 WP_003044773.1 aminopeptidase C -
  GE022_RS07960 (GE022_007950) nadE 1626188..1627012 (-) 825 WP_164405069.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23527.03 Da        Isoelectric Point: 9.5636

>NTDB_id=394539 GE022_RS07945 WP_003044766.1 1621861..1622469(+) (recU) [Streptococcus canis strain HL_77_2]
MVNYPHNLIRQKPNSVQKRSKQNKVDFANRGMSFEATINATNDYYLSQQIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMVAVLEQQGICFVLLHFSTLKETYYLPAKALIDFYQID
HGNKSMPLDYIRKHGFEIVMGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=394539 GE022_RS07945 WP_003044766.1 1621861..1622469(+) (recU) [Streptococcus canis strain HL_77_2]
ATGGTCAACTACCCTCATAATCTTATTCGGCAAAAACCAAATTCTGTTCAAAAGCGATCAAAACAAAATAAGGTGGATTT
TGCTAACCGAGGCATGTCCTTTGAAGCAACTATCAATGCGACAAACGATTATTATTTGTCACAGCAAATAGCTGTTATTC
ATAAAAAACCTACCCCTATCCAAATTGTTAAGGTAGACTACCCTAAGCGTAGTCGCGCTAAGATTGTAGAAGCTTACTTT
AGACAGGCTTCCACAACTGACTATTCTGGTGTTTACAAGGGGCATTATATTGATTTTGAAGCCAAGGAAACCAGACAAAA
AACAGCCATGCCCATGAAAAACTTTCATCTTCATCAGATTGAACACATGGTAGCCGTTTTGGAGCAACAAGGAATTTGTT
TTGTCCTTCTTCACTTTTCGACCCTCAAGGAAACCTACTATTTACCTGCTAAAGCACTGATTGATTTTTATCAAATCGAT
CACGGGAACAAATCCATGCCCCTCGATTATATCAGAAAACATGGCTTTGAGATAGTGATGGGAGCATTTCCTCAGGTCCC
TTACTTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495

Multiple sequence alignment