Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FPL20_RS13345 Genome accession   NZ_CP045478
Coordinates   2513312..2513932 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain JD-014     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2508312..2518932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS13325 (FPL20_GE02521) dnaD 2508603..2509301 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  FPL20_RS13330 (FPL20_GE02522) nth 2509320..2509979 (+) 660 WP_009967580.1 endonuclease III -
  FPL20_RS13335 (FPL20_GE02523) ypoC 2509976..2510470 (+) 495 WP_009967579.1 YpoC family protein -
  FPL20_RS13340 (FPL20_GE02524) ponA 2510546..2513290 (-) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  FPL20_RS13345 (FPL20_GE02525) recU 2513312..2513932 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  FPL20_RS13350 (FPL20_GE02526) yppC 2513973..2514935 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  FPL20_RS13355 (FPL20_GE02527) sspM 2514960..2515064 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  FPL20_RS13360 (FPL20_GE02528) yppD 2515263..2515508 (+) 246 WP_004398488.1 YppD family protein -
  FPL20_RS13365 (FPL20_GE02529) yppE 2515554..2515925 (+) 372 WP_003246080.1 YppE family protein -
  FPL20_RS13370 (FPL20_GE02530) yppF 2515964..2516152 (-) 189 WP_003230690.1 YppF family protein -
  FPL20_RS13375 (FPL20_GE02531) sppG 2516340..2516717 (+) 378 WP_004398696.1 YppG family protein -
  FPL20_RS13380 (FPL20_GE02532) ypqA 2516738..2517157 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  FPL20_RS13385 (FPL20_GE02533) ptsA 2517295..2517801 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=394506 FPL20_RS13345 WP_004399067.1 2513312..2513932(-) (recU) [Bacillus subtilis strain JD-014]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=394506 FPL20_RS13345 WP_004399067.1 2513312..2513932(-) (recU) [Bacillus subtilis strain JD-014]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment